file_properties.hpp

Go to the documentation of this file.

#ifndef FILE_PROPERTIES_HPP_
#define FILE_PROPERTIES_HPP_
#include <iosfwd>
#include <string>
#include "vdj_pipe/config.hpp"

namespace vdj_pipe{

namespace compression {

enum Compression {
   none, unknown, gzip,
   bzip2, zlib, pkzip, rar, seven_z
};

}//namespace compression

VDJ_PIPE_DECL compression::Compression
extension_to_compression(std::string const& ext);

VDJ_PIPE_DECL compression::Compression
compression_magic(std::istream& is);

namespace format {

enum Format {
   unknown, Fasta, Fastq, Qual, CSV
};

}//namespace format

VDJ_PIPE_DECL format::Format
extension_to_format(std::string const& ext);

namespace plot {

enum Plot {
   bar, line, bar_n_wisker, heat_map
};

}//namespace plot

}//namespace vdj_pipe
#endif /* FILE_PROPERTIES_HPP_ */