Here is a list of all documented files with brief descriptions:

[detail level 1234]

▼ apps
vdj_pipe.cpp
▼ include
▼ vdj_pipe
► detail
comparison_operators_macro.hpp
disable_warnings.hpp
get_by_id.hpp
id_bimap.hpp
id_iterator.hpp
id_map.hpp
identity_predicate.hpp
keyword_struct_macro.hpp
named_value_map.hpp
object_id_base.hpp
parser_line.hpp
queable_ofstream_types.hpp
string_ref.hpp
unused_variable.hpp
vector_set.hpp
► gdst
common_subsequence.hpp
depth_first_iterator.hpp
gdst.hpp
gdst_stats.hpp
node_ids.hpp
nodes.hpp
pattern_iterator.hpp
print_gdst.hpp
► step
all_paired_read_steps.hpp
all_single_read_steps.hpp
all_steps.hpp
apply_to_adaptor.hpp
blank_step.hpp
composition_stats_step.hpp
external_mid_base.hpp
external_mid_infile.hpp
external_mid_inline.hpp
filter_base.hpp
filter_step.hpp
find_shared.hpp
histogram_step.hpp
match_step.hpp
merge_paired_reads_step.hpp
quality_stats_step.hpp
step_base.hpp
step_base_paired.hpp
step_base_paired_emid.hpp
step_base_single.hpp
step_factory.hpp
step_factory_paired.hpp
step_factory_paired_emid.hpp
step_factory_single.hpp
step_maker.hpp
step_variant_paired_emid_read.hpp
step_variant_paired_read.hpp
step_variant_single_read.hpp
step_variant_store.hpp
step_variant_universal.hpp
visitor.hpp
write_sequence_step.hpp
write_value_step.hpp
best_match_pair.hpp
command_line_options.hpp
config.hpp
exception.hpp
file.hpp
file_ostream_queue.hpp
file_ostream_variant.hpp
file_properties.hpp
file_stream.hpp
find_interval.hpp
gdst_search.hpp
histogram_1d.hpp
input_manager.hpp
interval_iterator.hpp
lib_info.hpp
min_match_length.hpp
nucleotide_index.hpp
object_ids.hpp
output_manager.hpp
output_stamp.hpp
parser_fasta.hpp
parser_fastq.hpp
parser_qual.hpp
pipe_environment.hpp
pipe_paired_emid_read.hpp
pipe_paired_read.hpp
pipe_single_read.hpp
pipeline.hpp
pipeline_input.hpp
print_sequence.hpp
process_options.hpp
read_info.hpp
read_info_store.hpp
sanitize_string.hpp
sequence_entry.hpp
sequence_file.hpp
sequence_file_entry.hpp
sequence_file_map.hpp
sequence_fls.hpp
sequence_interval.hpp
sequence_match.hpp
sequence_merge.hpp
sequence_position.hpp
sequence_record.hpp
sequence_store.hpp
sequence_transform.hpp
value_map.hpp
value_map_access_paired.hpp
value_map_access_single.hpp
value_names.hpp
value_variant.hpp
variable_path.hpp