process_options.hpp

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#ifndef PROCESS_OPTIONS_HPP_
#define PROCESS_OPTIONS_HPP_
#include "vdj_pipe/config.hpp"
#include "boost/property_tree/ptree_fwd.hpp"

namespace vdj_pipe{

VDJ_PIPE_DECL void process_options(boost::property_tree::ptree const& pt);

VDJ_PIPE_DECL void process_single_reads(boost::property_tree::ptree const& pt);

VDJ_PIPE_DECL void process_paired_reads(boost::property_tree::ptree const& pt);

VDJ_PIPE_DECL void process_paired_emid_reads(boost::property_tree::ptree const& pt);

}//namespace vdj_pipe
#endif /* PROCESS_OPTIONS_HPP_ */