#include "boost/assert.hpp"
#include "vdj_pipe/detail/vector_set.hpp"
#include "vdj_pipe/sequence_position.hpp"

Include dependency graph for common_subsequence.hpp:

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Namespaces
	vdj_pipe
	Main namespace of vdj_pipe library.

Functions
bool	vdj_pipe::gdst::mismatching_end (const unsigned start1, const unsigned len1, const unsigned start2, const unsigned len2, const unsigned match_len)

Detailed Description

part of vdj_pipe project.

Distributed under GNU General Public License, Version 3; see doc/license.txt.
Copyright Mikhail K Levin 2014

Function Documentation

bool vdj_pipe::gdst::mismatching_end	(	const unsigned	start1,
		const unsigned	len1,
		const unsigned	start2,
		const unsigned	len2,
		const unsigned	match_len
	)

inline

Parameters

start1	start of the aligned region in the first sequence
len1	length of the first sequence
start2	start of the aligned region in the second sequence
len2	length of the second sequence
match_len	length of the aligned region