vdj_pipe
pipeline for processing DNA sequence data
external_mid_inline.hpp
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1 
7 #ifndef EXTERNAL_MID_INLINE_HPP_
8 #define EXTERNAL_MID_INLINE_HPP_
9 #include "vdj_pipe/config.hpp"
12 
13 namespace vdj_pipe{
14 
17 class VDJ_PIPE_DECL External_mid_inline
18  : public detail::Step_base_single,
20 public:
21 
23  Vm_access_single const& vma,
24  boost::property_tree::ptree const& pt,
26  );
27 
28  void run();
29 };
30 
31 }//namespace vdj_pipe
32 #endif /* EXTERNAL_MID_INLINE_HPP_ */
Definition: value_map_access_single.hpp:16
Main namespace of vdj_pipe library.
Definition: sequence_file.hpp:14
Definition: pipe_environment.hpp:26
Look for external MIDs in FASTA/Q description lines.
Definition: external_mid_inline.hpp:17
Definition: external_mid_base.hpp:30
Definition: step_base_single.hpp:16