vdj_pipe::detail::External_mid_base Class Reference

Inheritance diagram for vdj_pipe::detail::External_mid_base:

Public Types
typedef Step_base::Err	Err

Protected Member Functions
	VDJ_PIPE_KEYWORD_STRUCT (kwds,(fasta_path)(pairs_path)(value_name)(min_score)(max_mismatches)(require_best))
std::size_t	mid_size () const
void	find_mid (const boost::string_ref seq, Value_map &vm)

Member Function Documentation

void vdj_pipe::detail::External_mid_base::find_mid ( const boost::string_ref  seq, Value_map &  vm  )

protected

Attempt to assign sequence to one of the MIDs, gather statistics;

Returns

MID name or an empty string if assignment could not be made

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The documentation for this class was generated from the following file:

• include/vdj_pipe/step/external_mid_base.hpp