vdj_pipe
pipeline for processing DNA sequence data
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Here is a list of all documented class members with links to the class documentation for each member:
- a -
assign :
vdj_pipe::Seq_fls< N, S >
at_end() :
vdj_pipe::gdst::Pattern_iter
at_pattern_end_ :
vdj_pipe::gdst::Match
at_tree_end_ :
vdj_pipe::gdst::Match
- b -
by_size() :
vdj_pipe::Read_info_store
,
vdj_pipe::Seq_store
by_size_range() :
vdj_pipe::Read_info_store
,
vdj_pipe::Seq_store
- c -
combine() :
vdj_pipe::Best_match_pair< ID, Score >
comm_ :
vdj_pipe::Seq_meta
create() :
vdj_pipe::Value_ids_single
curr_ :
vdj_pipe::gdst::Match
- e -
edge_len_ :
vdj_pipe::gdst::Gdst_stats
en_ :
vdj_pipe::gdst::Match
ensure() :
vdj_pipe::Value_ids_single
- f -
File_ostream_variant() :
vdj_pipe::File_ostream_variant
find() :
vdj_pipe::detail::Vector_set< T, Alloc >
find_longest() :
vdj_pipe::gdst::Gdst
find_mid() :
vdj_pipe::detail::External_mid_base
find_overlaping() :
vdj_pipe::gdst::Gdst
- h -
has_emid() :
vdj_pipe::Input_manager
has_quality() :
vdj_pipe::Input_manager
- i -
i_ :
vdj_pipe::gdst::Match
id_ :
vdj_pipe::Seq_meta
insert() :
vdj_pipe::detail::Id_map< Id, Obj, Stor >
,
vdj_pipe::Seq_store
interval() :
vdj_pipe::Vm_access_single
is_paired() :
vdj_pipe::Input_manager
is_reverse() :
vdj_pipe::Vm_access_single
- l -
leaf_ :
vdj_pipe::gdst::Branch
len_ :
vdj_pipe::gdst::Common_subseq
- m -
min_d_ :
vdj_pipe::gdst::Match
mismatch_ :
vdj_pipe::gdst::Match
- n -
n_ :
vdj_pipe::gdst::Branch
,
vdj_pipe::Seq_match
n_leafs_ :
vdj_pipe::gdst::Gdst_stats
nc_ :
vdj_pipe::gdst::Gdst_stats
ncl_ :
vdj_pipe::gdst::Gdst_stats
nl_ :
vdj_pipe::gdst::Gdst_stats
- p -
path() :
vdj_pipe::Output_manager
pn_ :
vdj_pipe::gdst::Match
- q -
qual_ :
vdj_pipe::Merge_result
,
vdj_pipe::Qual_record
,
vdj_pipe::Seq_qual_record
- s -
sb_ :
vdj_pipe::gdst::Branch
seek_line() :
vdj_pipe::detail::Parser_line
seq_ :
vdj_pipe::gdst::Common_subseq
,
vdj_pipe::Merge_result
,
vdj_pipe::Seq_match
,
vdj_pipe::Seq_qual_record
,
vdj_pipe::Seq_record
seq_len_ :
vdj_pipe::gdst::Gdst_stats
sequence() :
vdj_pipe::Vm_access_single
size() :
vdj_pipe::File_ostream_variant
skip_empty() :
vdj_pipe::File_ostream_variant
sl_ :
vdj_pipe::gdst::Branch
start_ :
vdj_pipe::gdst::Common_subseq
- v -
Value_ids_single() :
vdj_pipe::Value_ids_single
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