vdj_pipe
pipeline for processing DNA sequence data
Public Member Functions | Public Attributes | List of all members
vdj_pipe::gdst::Gdst_stats Struct Reference
Collaboration diagram for vdj_pipe::gdst::Gdst_stats:
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Public Member Functions

 Gdst_stats (Gdst const &tree)
 

Public Attributes

unsigned nc_
 
unsigned nl_
 
unsigned ncl_
 
std::vector< unsigned > edge_len_
 
std::vector< unsigned > seq_len_
 
std::vector< unsigned > n_leafs_
 

Member Data Documentation

std::vector<unsigned> vdj_pipe::gdst::Gdst_stats::edge_len_

edge length histogram

std::vector<unsigned> vdj_pipe::gdst::Gdst_stats::n_leafs_

number of sequence leafs per node histogram

unsigned vdj_pipe::gdst::Gdst_stats::nc_

number of nodes with children

unsigned vdj_pipe::gdst::Gdst_stats::ncl_

number of nodes with children and leafs

unsigned vdj_pipe::gdst::Gdst_stats::nl_

number of nodes with leafs

std::vector<unsigned> vdj_pipe::gdst::Gdst_stats::seq_len_

sequence length histogram


The documentation for this struct was generated from the following file: