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A

Pipe_paired_emid_read::Err (vdj_pipe)

Gdst_stats (vdj_pipe::gdst)

O

Seq_record (vdj_pipe)

Vm_access_paired::Err (vdj_pipe)

Get_match_length (vdj_pipe)

Seq_store (vdj_pipe)

Ambiguous_window_filter (vdj_pipe)

Command_line_options::Err (vdj_pipe)

Getter (vdj_pipe::detail)

Output_manager (vdj_pipe)

Step_base (vdj_pipe::detail)

Apply_many (vdj_pipe)

Pipe_single_read::Err (vdj_pipe)

H

P

Step_base_paired (vdj_pipe::detail)

Apply_one (vdj_pipe)

Read_info_store::Err (vdj_pipe)

Step_base_paired_emid (vdj_pipe::detail)

Apply_to_maker (vdj_pipe::step)

File::Err (vdj_pipe)

Histogram_1d (vdj_pipe)

Parser_fasta (vdj_pipe)

Step_base_single (vdj_pipe::detail)

Average_quality_filter (vdj_pipe)

Queable_ofstream::Err (vdj_pipe)

Histogram_step (vdj_pipe)

Parser_fastq (vdj_pipe)

Step_variant_store (vdj_pipe)

Average_quality_window_filter (vdj_pipe)

File_ostream_queue::Err (vdj_pipe)

Homopolymer_filter (vdj_pipe)

Parser_line (vdj_pipe::detail)

Summary_visitor (vdj_pipe)

B

Vm_access_single::Err (vdj_pipe)

I

Parser_qual (vdj_pipe)

Summary_visitor2 (vdj_pipe)

Match_fraction_length::Err (vdj_pipe)

Pattern_iter (vdj_pipe::gdst)

T

Base_id (vdj_pipe::detail)

Get_match_length::Err (vdj_pipe)

Id_bimap (vdj_pipe::detail)

Pipe_environment (vdj_pipe)

Best_match_pair (vdj_pipe)

Input_manager::Err (vdj_pipe)

Id_iterator (vdj_pipe)

Pipe_paired_emid_read (vdj_pipe)

Type_index (vdj_pipe)

Blank (vdj_pipe)

File_ostream_variant::Err (vdj_pipe)

Id_map (vdj_pipe::detail)

Pipe_paired_read (vdj_pipe)

Type_name (vdj_pipe::detail)

Blank_step (vdj_pipe)

File_ostream::Err (vdj_pipe)

Identity (vdj_pipe)

Pipe_single_read (vdj_pipe)

U

Branch (vdj_pipe::gdst)

File_istream::Err (vdj_pipe)

Input_manager (vdj_pipe)

Pipeline (vdj_pipe)

C

Value_map::Err (vdj_pipe)

Interval_checking_policy (vdj_pipe::detail)

Pipeline_input (vdj_pipe)

Unambiguous_interval_iter (vdj_pipe)

Parser_line::Err (vdj_pipe::detail)

Interval_checking_policy< int > (vdj_pipe::detail)

Q

V

Character_filter (vdj_pipe)

Gdst::Err (vdj_pipe::gdst)

Is_ambiguous (vdj_pipe)

Children (vdj_pipe::gdst)

External_mid_base (vdj_pipe::detail)

L

Qual_record (vdj_pipe)

Value_ids_emid (vdj_pipe)

Command_line_options (vdj_pipe)

External_mid_infile (vdj_pipe)

Qual_stats (vdj_pipe)

Value_ids_paired (vdj_pipe)

Common_subseq (vdj_pipe::gdst)

External_mid_inline (vdj_pipe)

Leaf (vdj_pipe::gdst)

Quality (vdj_pipe)

Value_ids_single (vdj_pipe)

Composition_stats (vdj_pipe)

F

Length_filter (vdj_pipe)

Queable_ofstream (vdj_pipe)

Value_map (vdj_pipe)

Config_paired_emid_reads (vdj_pipe)

Lib_info (vdj_pipe)

Queable_ofstream_types (vdj_pipe::detail)

Value_names (vdj_pipe)

Config_paired_reads (vdj_pipe)

File (vdj_pipe)

M

R

Variable_path (vdj_pipe)

Config_single_reads (vdj_pipe)

File_input (vdj_pipe)

Vector_set (vdj_pipe::detail)

D

File_istream (vdj_pipe)

Maker (vdj_pipe::step)

Read_info (vdj_pipe)

Vm_access_paired (vdj_pipe)

File_ostream (vdj_pipe)

Match (vdj_pipe::gdst)

Read_info_store (vdj_pipe)

Vm_access_paired_emid (vdj_pipe)

Depth_iter (vdj_pipe::gdst)

File_ostream_queue (vdj_pipe)

Match_fraction_length (vdj_pipe)

Run_visitor (vdj_pipe)

Vm_access_single (vdj_pipe)

E

File_ostream_variant (vdj_pipe)

Match_full_length (vdj_pipe)

S

W

File_output (vdj_pipe)

Match_ignore_ends (vdj_pipe)

Equal_string_ref (vdj_pipe::detail)

Filter_base (vdj_pipe::detail)

Match_min_length (vdj_pipe)

Seq_entry (vdj_pipe)

Window_filter_base (vdj_pipe::detail)

Apply_to_maker::Err (vdj_pipe::step)

Find_maker (vdj_pipe::step)

Match_step (vdj_pipe)

Seq_file (vdj_pipe)

Write_seq (vdj_pipe)

Step_base::Err (vdj_pipe::detail)

Find_maker< Apply_many > (vdj_pipe::step)

Merge_paired (vdj_pipe)

Seq_file_entry (vdj_pipe)

Write_value (vdj_pipe)

Seq_file_map::Err (vdj_pipe)

Find_maker< Apply_one > (vdj_pipe::step)

Merge_result (vdj_pipe)

Seq_file_map (vdj_pipe)

b

Seq_file_entry::Err (vdj_pipe)

Find_shared (vdj_pipe)

Min_quality_filter (vdj_pipe)

Seq_fls (vdj_pipe)

Output_manager::Err (vdj_pipe)

Finish_visitor (vdj_pipe)

Min_quality_window_filter (vdj_pipe)

Seq_match (vdj_pipe)

base_exception (vdj_pipe)

Pipe_environment::Err (vdj_pipe)

G

N

Seq_meta (vdj_pipe)

m

Pipe_paired_read::Err (vdj_pipe)

Seq_pos (vdj_pipe)

Variable_path::Err (vdj_pipe)

Gdst (vdj_pipe::gdst)

Named_value_map (vdj_pipe::detail)

Seq_qual_record (vdj_pipe)

multi_array (boost)

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