vdj_pipe
pipeline for processing DNA sequence data
Public Member Functions | Static Public Member Functions | List of all members
vdj_pipe::Pipeline< Config > Class Template Reference

Public Member Functions

 Pipeline (Pipe_environment const &pe)
 
 Pipeline (boost::property_tree::ptree const &pt, Pipe_environment const &pe)
 
void add_step (boost::property_tree::ptree const &pt)
 
void add_step (processing_step const &step)
 
vm_access const & value_map () const
 
vm_access & value_map ()
 
void process_read ()
 
std::size_t size () const
 
processing_step const & step (const std::size_t n) const
 
void run ()
 
void finalize ()
 

Static Public Member Functions

static std::string const & name ()
 

The documentation for this class was generated from the following file: