vdj_pipe
pipeline for processing DNA sequence data
Classes | Public Member Functions | List of all members
vdj_pipe::Pipe_environment Class Reference

Classes

struct  Err
 

Public Member Functions

 Pipe_environment (boost::property_tree::ptree const &pt, Value_map const &vm)
 
Step_variant_store const & steps () const
 
Step_variant_storesteps ()
 
Input_manager const & input () const
 
Input_managerinput ()
 
Output_manager const & output () const
 
Output_manageroutput ()
 
char delimiter () const
 
std::size_t max_reads () const
 
std::size_t max_file_reads () const
 
bool process_more ()
 
std::size_t read_count () const
 
void finish ()
 
void process_read ()
 
void summary ()
 
void write_config (boost::property_tree::ptree const &pt, std::string const &path) const
 
void start_file (std::string const &fn)
 
void finish_file ()
 

The documentation for this class was generated from the following file: