vdj_pipe
pipeline for processing DNA sequence data
vdj_pipe::Pipe_environment Member List

This is the complete list of members for vdj_pipe::Pipe_environment, including all inherited members.

delimiter() const (defined in vdj_pipe::Pipe_environment)vdj_pipe::Pipe_environmentinline
finish() (defined in vdj_pipe::Pipe_environment)vdj_pipe::Pipe_environment
finish_file() (defined in vdj_pipe::Pipe_environment)vdj_pipe::Pipe_environment
input() const (defined in vdj_pipe::Pipe_environment)vdj_pipe::Pipe_environmentinline
input() (defined in vdj_pipe::Pipe_environment)vdj_pipe::Pipe_environmentinline
max_file_reads() const (defined in vdj_pipe::Pipe_environment)vdj_pipe::Pipe_environmentinline
max_reads() const (defined in vdj_pipe::Pipe_environment)vdj_pipe::Pipe_environmentinline
output() const (defined in vdj_pipe::Pipe_environment)vdj_pipe::Pipe_environmentinline
output() (defined in vdj_pipe::Pipe_environment)vdj_pipe::Pipe_environmentinline
Pipe_environment(boost::property_tree::ptree const &pt, Value_map const &vm) (defined in vdj_pipe::Pipe_environment)vdj_pipe::Pipe_environment
process_more() (defined in vdj_pipe::Pipe_environment)vdj_pipe::Pipe_environmentinline
process_read() (defined in vdj_pipe::Pipe_environment)vdj_pipe::Pipe_environment
read_count() const (defined in vdj_pipe::Pipe_environment)vdj_pipe::Pipe_environment
start_file(std::string const &fn) (defined in vdj_pipe::Pipe_environment)vdj_pipe::Pipe_environment
steps() const (defined in vdj_pipe::Pipe_environment)vdj_pipe::Pipe_environmentinline
steps() (defined in vdj_pipe::Pipe_environment)vdj_pipe::Pipe_environmentinline
summary() (defined in vdj_pipe::Pipe_environment)vdj_pipe::Pipe_environment
write_config(boost::property_tree::ptree const &pt, std::string const &path) const (defined in vdj_pipe::Pipe_environment)vdj_pipe::Pipe_environment