vdj_pipe::Composition_stats Class Reference

Inheritance diagram for vdj_pipe::Composition_stats:

Collaboration diagram for vdj_pipe::Composition_stats:

Public Member Functions
	VDJ_PIPE_STATIC_STRING_METHOD (comment,"calculate composition statistics of sequencing reads") VDJ_PIPE_STATIC_STRING_METHOD(description
based on trimmed reads	Composition_stats (Vm_access_single const &vma, boost::property_tree::ptree const &pt, Pipe_environment &pe)
void	run ()
void	finish ()
Public Member Functions inherited from vdj_pipe::detail::Step_base_single
void	reset_access (Value_ids_single const &ids)
Public Member Functions inherited from vdj_pipe::detail::Step_base
char	delimiter () const
	Step_base (boost::property_tree::ptree const &pt, Pipe_environment const &pe)
void	summary (std::ostream &) const

Additional Inherited Members
Public Types inherited from vdj_pipe::detail::Step_base_single
typedef Vm_access_single	vma_type
Public Types inherited from vdj_pipe::detail::Step_base
typedef Seq_record::sequence	seq_type
typedef Qual_record::quality	qual_type
Protected Member Functions inherited from vdj_pipe::detail::Step_base_single
	Step_base_single (vma_type const &vma, boost::property_tree::ptree const &pt, Pipe_environment const &pe)
Protected Attributes inherited from vdj_pipe::detail::Step_base_single
Vm_access_single	vma_

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The documentation for this class was generated from the following file:

• include/vdj_pipe/step/composition_stats_step.hpp