vdj_pipe
pipeline for processing DNA sequence data
vdj_pipe::Composition_stats Member List

This is the complete list of members for vdj_pipe::Composition_stats, including all inherited members.

Composition_stats(Vm_access_single const &vma, boost::property_tree::ptree const &pt, Pipe_environment &pe) (defined in vdj_pipe::Composition_stats)vdj_pipe::Composition_stats
delimiter() const (defined in vdj_pipe::detail::Step_base)vdj_pipe::detail::Step_baseinline
finish() (defined in vdj_pipe::Composition_stats)vdj_pipe::Composition_stats
qual_type typedef (defined in vdj_pipe::detail::Step_base)vdj_pipe::detail::Step_base
reset_access(Value_ids_single const &ids) (defined in vdj_pipe::detail::Step_base_single)vdj_pipe::detail::Step_base_singleinline
run() (defined in vdj_pipe::Composition_stats)vdj_pipe::Composition_stats
seq_type typedef (defined in vdj_pipe::detail::Step_base)vdj_pipe::detail::Step_base
Step_base(boost::property_tree::ptree const &pt, Pipe_environment const &pe) (defined in vdj_pipe::detail::Step_base)vdj_pipe::detail::Step_base
Step_base_single(vma_type const &vma, boost::property_tree::ptree const &pt, Pipe_environment const &pe) (defined in vdj_pipe::detail::Step_base_single)vdj_pipe::detail::Step_base_singleinlineprotected
summary(std::ostream &) const (defined in vdj_pipe::detail::Step_base)vdj_pipe::detail::Step_baseinline
VDJ_PIPE_STATIC_STRING_METHOD(comment,"calculate composition statistics of sequencing reads") VDJ_PIPE_STATIC_STRING_METHOD(description (defined in vdj_pipe::Composition_stats)vdj_pipe::Composition_stats
vma_ (defined in vdj_pipe::detail::Step_base_single)vdj_pipe::detail::Step_base_singleprotected
vma_type typedef (defined in vdj_pipe::detail::Step_base_single)vdj_pipe::detail::Step_base_single