vdj_pipe
pipeline for processing DNA sequence data
Classes | Public Types | Public Member Functions | List of all members
vdj_pipe::Seq_file_entry Class Reference

#include <sequence_file_entry.hpp>

Classes

struct  Err
 

Public Types

typedef std::map< Val_id, value_variant > map_t
 
typedef map_t::const_iterator iterator
 
typedef map_t::const_iterator const_iterator
 
typedef map_t::value_type value_type
 

Public Member Functions

 Seq_file_entry (map_t const &m, Input_manager const &im, Value_map const &vm)
 
const_iterator begin () const
 
const_iterator end () const
 
bool is_paired () const
 
bool has_emid () const
 
bool has_quality () const
 
bool has_qual_file () const
 
std::string const & sequence () const
 
std::string const & quality () const
 
std::string const & seq_rev () const
 
std::string const & qual_rev () const
 
std::string const & mid () const
 
std::string const & mid_rev () const
 

Detailed Description

Tuple of sequence data files that should be processed in parallel and associated info. Examples:


The documentation for this class was generated from the following file: