vdj_pipe
pipeline for processing DNA sequence data
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#include <sequence_file_entry.hpp>
Classes | |
struct | Err |
Public Types | |
typedef std::map< Val_id, value_variant > | map_t |
typedef map_t::const_iterator | iterator |
typedef map_t::const_iterator | const_iterator |
typedef map_t::value_type | value_type |
Public Member Functions | |
Seq_file_entry (map_t const &m, Input_manager const &im, Value_map const &vm) | |
const_iterator | begin () const |
const_iterator | end () const |
bool | is_paired () const |
bool | has_emid () const |
bool | has_quality () const |
bool | has_qual_file () const |
std::string const & | sequence () const |
std::string const & | quality () const |
std::string const & | seq_rev () const |
std::string const & | qual_rev () const |
std::string const & | mid () const |
std::string const & | mid_rev () const |
Tuple of sequence data files that should be processed in parallel and associated info. Examples: