vdj_pipe
pipeline for processing DNA sequence data
Classes | Public Member Functions | Protected Member Functions | Protected Attributes | List of all members
vdj_pipe::detail::Parser_line Class Reference

Basic line-based parser; use to derive other parsers. More...

#include <parser_line.hpp>

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Classes

struct  Err
 

Public Member Functions

int line_num () const
 
bool has_next () const
 

Protected Member Functions

 Parser_line (File_input const &fi)
 
 Parser_line (std::istream &is, const compression::Compression compr)
 
void skip_line ()
 
void seek_line (const char tag)
 
const boost::string_ref get_id (const char tag)
 
void set_meta (Seq_meta &sm, const char tag)
 
const boost::string_ref get_defstr (const char tag)
 
std::string get_sequence (const char tag)
 
void check () const
 

Protected Attributes

File_istream fis_
 
std::string str_
 
int line_
 

Detailed Description

Basic line-based parser; use to derive other parsers.

Member Function Documentation

void vdj_pipe::detail::Parser_line::seek_line ( const char  tag)
inlineprotected

seek line starting from tag


The documentation for this class was generated from the following file: