vdj_pipe
pipeline for processing DNA sequence data
Public Member Functions | Friends | List of all members
vdj_pipe::Seq_file Class Reference
Inheritance diagram for vdj_pipe::Seq_file:
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Collaboration diagram for vdj_pipe::Seq_file:
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Public Member Functions

 Seq_file (std::string const &path, const bool reverse=false)
 
Path_id id () const
 
bool is_reverse () const
 
Seq_filereverse (const bool rev)
 
- Public Member Functions inherited from vdj_pipe::File_input
 File_input (std::string const &path)
 
- Public Member Functions inherited from vdj_pipe::File
 File (std::string const &path, const compression::Compression compr=compression::unknown, const format::Format fmt=format::unknown)
 
std::string const & path () const
 
format::Format format () const
 
compression::Compression compression () const
 
bool operator== (File const &f2) const
 
bool operator< (File const &f2) const
 

Friends

class Seq_file_map
 

Additional Inherited Members

- Protected Attributes inherited from vdj_pipe::File
std::string path_
 
compression::Compression compr_
 
format::Format fmt_
 

The documentation for this class was generated from the following file: