vdj_pipe
pipeline for processing DNA sequence data
Classes | Public Member Functions | Static Public Member Functions | List of all members
vdj_pipe::Command_line_options Class Reference

Classes

struct  Err
 

Public Member Functions

 Command_line_options (int argc, char *argv[])
 
bool is_help () const
 
std::string const & help_opt () const
 
bool version () const
 
bool args_provided () const
 
std::ostream & print_help (std::ostream &os) const
 
std::size_t max_reads () const
 
std::size_t max_file_reads () const
 
boost::property_tree::ptree tree () const
 
std::vector< std::string > const & config_files () const
 
void add_config_file (std::string const &config_fn)
 
void set_path_input (std::string const &in_path)
 
void set_path_output (std::string const &out_path)
 

Static Public Member Functions

static std::ostream & print_version (std::ostream &os)
 
static std::ostream & print_info (std::ostream &os)
 
static std::ostream & print_usage (std::ostream &os)
 

The documentation for this class was generated from the following file: