vdj_pipe
pipeline for processing DNA sequence data
vdj_pipe::Command_line_options Member List

This is the complete list of members for vdj_pipe::Command_line_options, including all inherited members.

add_config_file(std::string const &config_fn) (defined in vdj_pipe::Command_line_options)vdj_pipe::Command_line_optionsinline
args_provided() const (defined in vdj_pipe::Command_line_options)vdj_pipe::Command_line_optionsinline
Command_line_options() (defined in vdj_pipe::Command_line_options)vdj_pipe::Command_line_optionsinline
Command_line_options(int argc, char *argv[]) (defined in vdj_pipe::Command_line_options)vdj_pipe::Command_line_options
config_files() const (defined in vdj_pipe::Command_line_options)vdj_pipe::Command_line_optionsinline
help_opt() const (defined in vdj_pipe::Command_line_options)vdj_pipe::Command_line_optionsinline
is_help() const (defined in vdj_pipe::Command_line_options)vdj_pipe::Command_line_optionsinline
max_file_reads() const (defined in vdj_pipe::Command_line_options)vdj_pipe::Command_line_optionsinline
max_reads() const (defined in vdj_pipe::Command_line_options)vdj_pipe::Command_line_optionsinline
print_help(std::ostream &os) const (defined in vdj_pipe::Command_line_options)vdj_pipe::Command_line_options
print_info(std::ostream &os) (defined in vdj_pipe::Command_line_options)vdj_pipe::Command_line_optionsstatic
print_usage(std::ostream &os) (defined in vdj_pipe::Command_line_options)vdj_pipe::Command_line_optionsstatic
print_version(std::ostream &os) (defined in vdj_pipe::Command_line_options)vdj_pipe::Command_line_optionsstatic
set_path_input(std::string const &in_path) (defined in vdj_pipe::Command_line_options)vdj_pipe::Command_line_optionsinline
set_path_output(std::string const &out_path) (defined in vdj_pipe::Command_line_options)vdj_pipe::Command_line_optionsinline
tree() const (defined in vdj_pipe::Command_line_options)vdj_pipe::Command_line_options
version() const (defined in vdj_pipe::Command_line_options)vdj_pipe::Command_line_optionsinline