vdj_pipe
pipeline for processing DNA sequence data
Classes | Namespaces
gdst.hpp File Reference
#include "boost/assert.hpp"
#include "boost/foreach.hpp"
#include "boost/shared_ptr.hpp"
#include "vdj_pipe/config.hpp"
#include "vdj_pipe/detail/disable_warnings.hpp"
#include "vdj_pipe/detail/id_map.hpp"
#include "vdj_pipe/detail/string_ref.hpp"
#include "vdj_pipe/exception.hpp"
#include "vdj_pipe/gdst/common_subsequence.hpp"
#include "vdj_pipe/gdst/depth_first_iterator.hpp"
#include "vdj_pipe/gdst/nodes.hpp"
#include "vdj_pipe/gdst/pattern_iterator.hpp"
#include "vdj_pipe/nucleotide_index.hpp"
#include "vdj_pipe/object_ids.hpp"
#include "vdj_pipe/sequence_entry.hpp"
Include dependency graph for gdst.hpp:
This graph shows which files directly or indirectly include this file:

Go to the source code of this file.

Classes

struct  vdj_pipe::gdst::Match
 Results of matching pattern to suffix tree. More...
 
class  vdj_pipe::gdst::Gdst
 Generalized DNA suffix tree. More...
 
struct  vdj_pipe::gdst::Gdst::Err
 

Namespaces

 vdj_pipe
 Main namespace of vdj_pipe library.
 

Detailed Description

part of vdj_pipe project.

Distributed under GNU General Public License, Version 3; see doc/license.txt.
Copyright Mikhail K Levin 2013