gdst.hpp File Reference

#include "boost/assert.hpp"
#include "boost/foreach.hpp"
#include "boost/shared_ptr.hpp"
#include "vdj_pipe/config.hpp"
#include "vdj_pipe/detail/disable_warnings.hpp"
#include "vdj_pipe/detail/id_map.hpp"
#include "vdj_pipe/detail/string_ref.hpp"
#include "vdj_pipe/exception.hpp"
#include "vdj_pipe/gdst/common_subsequence.hpp"
#include "vdj_pipe/gdst/depth_first_iterator.hpp"
#include "vdj_pipe/gdst/nodes.hpp"
#include "vdj_pipe/gdst/pattern_iterator.hpp"
#include "vdj_pipe/nucleotide_index.hpp"
#include "vdj_pipe/object_ids.hpp"
#include "vdj_pipe/sequence_entry.hpp"

Include dependency graph for gdst.hpp:

This graph shows which files directly or indirectly include this file:

Go to the source code of this file.

Classes
struct	vdj_pipe::gdst::Match
	Results of matching pattern to suffix tree. More...
class	vdj_pipe::gdst::Gdst
	Generalized DNA suffix tree. More...
struct	vdj_pipe::gdst::Gdst::Err

Namespaces
	vdj_pipe
	Main namespace of vdj_pipe library.

Detailed Description

part of vdj_pipe project.

Distributed under GNU General Public License, Version 3; see doc/license.txt.
Copyright Mikhail K Levin 2013