sequence_fls.hpp File Reference

#include <algorithm>
#include <ostream>
#include "boost/assert.hpp"
#include "boost/cstdint.hpp"
#include "boost/integer/static_log2.hpp"
#include "vdj_pipe/nucleotide_index.hpp"
#include "vdj_pipe/exception.hpp"
#include "vdj_pipe/detail/string_ref.hpp"

Include dependency graph for sequence_fls.hpp:

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Classes
class	vdj_pipe::Seq_fls< N, S >
	store short sequence in an integer More...

Namespaces
	vdj_pipe
	Main namespace of vdj_pipe library.

Functions
template<class Seq >
int	vdj_pipe::identity (Seq const &s1, const boost::string_ref s2, scoring_matrix_t const &sm, const std::size_t=0)
template<unsigned N, typename S >
int	vdj_pipe::identity (const Seq_fls< N, S > seq1, const Seq_fls< N, S > seq2, scoring_matrix_t const &sm, const unsigned len=N)

Detailed Description

part of vdj_pipe project.

Distributed under GNU General Public License, Version 3; see doc/license.txt.
Copyright Mikhail K Levin 2013