vdj_pipe
pipeline for processing DNA sequence data
Namespaces | Functions
gdst_search.hpp File Reference
#include <string>
#include <vector>
#include "boost/algorithm/string/predicate.hpp"
#include "boost/algorithm/string/classification.hpp"
#include "boost/assert.hpp"
#include "boost/foreach.hpp"
#include "vdj_pipe/detail/disable_warnings.hpp"
#include "vdj_pipe/gdst/gdst.hpp"
#include "vdj_pipe/sequence_store.hpp"
Include dependency graph for gdst_search.hpp:

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Namespaces

 vdj_pipe
 Main namespace of vdj_pipe library.
 

Functions

template<class MinLength >
void vdj_pipe::remove_subsequences (Seq_store &ss, gdst::Gdst &st, MinLength const &min_len)
 identify unique sequences in sequence store, insert them into suffix tree, and remove non-unique ones
 

Detailed Description

part of vdj_pipe project.

Distributed under GNU General Public License, Version 3; see doc/license.txt.
Copyright Mikhail K Levin 2013