sequence_transform.hpp File Reference

#include <string>
#include "boost/range.hpp"
#include "boost/range/as_literal.hpp"
#include "vdj_pipe/detail/string_ref.hpp"
#include "vdj_pipe/exception.hpp"
#include "vdj_pipe/nucleotide_index.hpp"
#include "vdj_pipe/sequence_interval.hpp"

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Namespaces
	vdj_pipe
	Main namespace of vdj_pipe library.

Functions
template<class Range >
std::string	vdj_pipe::complement (Range const &r)
std::string	vdj_pipe::transform (const boost::string_ref seq, sequence_interval const &si, const bool reverse)
	Reverse-complement (optionally) a portion of a sequence.

Detailed Description

part of vdj_pipe project.

Distributed under GNU General Public License, Version 3; see doc/license.txt.
Copyright Mikhail K Levin 2013