find_interval.hpp File Reference

#include <utility>
#include <deque>
#include "vdj_pipe/sequence_record.hpp"
#include "vdj_pipe/nucleotide_index.hpp"

Include dependency graph for find_interval.hpp:

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Namespaces
	vdj_pipe
	Main namespace of vdj_pipe library.

Functions
std::pair< std::size_t, std::size_t >	vdj_pipe::longest_average_interval (Qual_record::quality const &q, const std::size_t min_q, const std::size_t win)
std::pair< std::size_t, std::size_t >	vdj_pipe::longest_min_interval (Qual_record::quality const &q, const Qual_record::quality::value_type min_q)
std::pair< std::size_t, std::size_t >	vdj_pipe::longest_unambiguous_interval (Seq_record::sequence const &seq, const std::size_t max)

Detailed Description

part of vdj_pipe project.

Distributed under GNU General Public License, Version 3; see doc/license.txt.
Copyright Mikhail K Levin 2014