vdj_pipe
pipeline for processing DNA sequence data
step_base_paired.hpp
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1 
7 #ifndef STEP_BASE_PAIRED_HPP_
8 #define STEP_BASE_PAIRED_HPP_
11 
12 namespace vdj_pipe{ namespace detail{
13 
16 class Step_base_paired : public Step_base {
17 protected:
19  Vm_access_paired const& vma,
20  boost::property_tree::ptree const& pt,
22  )
23  : Step_base(pt, pe), vma_(vma)
24  {}
25 
26  Vm_access_paired vma_;
27 };
28 
29 }//namespace detail
30 }//namespace vdj_pipe
31 #endif /* STEP_BASE_PAIRED_HPP_ */
Access to value map for paired read pipeline and processing steps.
Definition: value_map_access_paired.hpp:16
Main namespace of vdj_pipe library.
Definition: sequence_file.hpp:14
Definition: pipe_environment.hpp:26
Definition: step_base.hpp:23
Definition: step_base_paired.hpp:16