vdj_pipe
pipeline for processing DNA sequence data
step_factory_paired.hpp
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1 
7 #ifndef STEP_FACTORY_PAIRED_HPP_
8 #define STEP_FACTORY_PAIRED_HPP_
11 #include "vdj_pipe/config.hpp"
13 
14 namespace vdj_pipe{
15 
18 VDJ_PIPE_DECL step_variant_paired create_step_paired(
19  Vm_access_paired const& vma,
20  boost::property_tree::ptree const& pt,
21  Pipe_environment& pe
22 );
23 
26 template<> inline Config_paired_reads::processing_step
27 create_step<Config_paired_reads>(
28  Config_paired_reads::value_map_access const& vma,
29  boost::property_tree::ptree const& pt,
30  Pipe_environment& pe
31 ) {
32  return create_step_paired(vma, pt, pe);
33 }
34 
35 }//namespace vdj_pipe
36 #endif /* STEP_FACTORY_PAIRED_HPP_ */
Main namespace of vdj_pipe library.
Definition: sequence_file.hpp:14