vdj_pipe
pipeline for processing DNA sequence data
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#include <utility>
#include <deque>
#include "vdj_pipe/sequence_record.hpp"
#include "vdj_pipe/nucleotide_index.hpp"
Go to the source code of this file.
Namespaces | |
vdj_pipe | |
Main namespace of vdj_pipe library. | |
Functions | |
std::pair< std::size_t, std::size_t > | vdj_pipe::longest_average_interval (Qual_record::quality const &q, const std::size_t min_q, const std::size_t win) |
std::pair< std::size_t, std::size_t > | vdj_pipe::longest_min_interval (Qual_record::quality const &q, const Qual_record::quality::value_type min_q) |
std::pair< std::size_t, std::size_t > | vdj_pipe::longest_unambiguous_interval (Seq_record::sequence const &seq, const std::size_t max) |
part of vdj_pipe project.
Distributed under GNU General Public License, Version 3; see doc/license.txt.
Copyright Mikhail K Levin 2014