File List

Here is a list of all files with brief descriptions:

[detail level 1234]

▼ apps
vdj_pipe.cpp
▼ include
► vdj_pipe
► detail
comparison_operators_macro.hpp
disable_warnings.hpp
get_by_id.hpp
id_bimap.hpp
id_iterator.hpp
id_map.hpp
identity_predicate.hpp
keyword_struct_macro.hpp
named_value_map.hpp
object_id_base.hpp
parser_line.hpp
queable_ofstream_types.hpp
string_ref.hpp
unused_variable.hpp
vector_set.hpp
► gdst
common_subsequence.hpp
depth_first_iterator.hpp
gdst.hpp
gdst_stats.hpp
node_ids.hpp
nodes.hpp
pattern_iterator.hpp
print_gdst.hpp
► step
all_paired_read_steps.hpp
all_single_read_steps.hpp
all_steps.hpp
apply_to_adaptor.hpp
blank_step.hpp
composition_stats_step.hpp
external_mid_base.hpp
external_mid_infile.hpp
external_mid_inline.hpp
filter_base.hpp
filter_step.hpp
find_shared.hpp
histogram_step.hpp
match_step.hpp
merge_paired_reads_step.hpp
quality_stats_step.hpp
step_base.hpp
step_base_paired.hpp
step_base_paired_emid.hpp
step_base_single.hpp
step_factory.hpp
step_factory_paired.hpp
step_factory_paired_emid.hpp
step_factory_single.hpp
step_maker.hpp
step_variant_paired_emid_read.hpp
step_variant_paired_read.hpp
step_variant_single_read.hpp
step_variant_store.hpp
step_variant_universal.hpp
visitor.hpp
write_sequence_step.hpp
write_value_step.hpp
best_match_pair.hpp
command_line_options.hpp
config.hpp
exception.hpp
file.hpp
file_ostream_queue.hpp
file_ostream_variant.hpp
file_properties.hpp
file_stream.hpp
find_interval.hpp
gdst_search.hpp
histogram_1d.hpp
input_manager.hpp
interval_iterator.hpp
lib_info.hpp
min_match_length.hpp
nucleotide_index.hpp
object_ids.hpp
output_manager.hpp
output_stamp.hpp
parser_fasta.hpp
parser_fastq.hpp
parser_qual.hpp
pipe_environment.hpp
pipe_paired_emid_read.hpp
pipe_paired_read.hpp
pipe_single_read.hpp
pipeline.hpp
pipeline_input.hpp
print_sequence.hpp
process_options.hpp
read_info.hpp
read_info_store.hpp
sanitize_string.hpp
sequence_entry.hpp
sequence_file.hpp
sequence_file_entry.hpp
sequence_file_map.hpp
sequence_fls.hpp
sequence_interval.hpp
sequence_match.hpp
sequence_merge.hpp
sequence_position.hpp
sequence_record.hpp
sequence_store.hpp
sequence_transform.hpp
value_map.hpp
value_map_access_paired.hpp
value_map_access_single.hpp
value_names.hpp
value_variant.hpp
variable_path.hpp
▼ lib
► external
ssw_cpp.cpp
► test
exception_fixture.hpp
execute_options_run.cpp
file_map_run.cpp
file_ostream_queue_run.cpp
file_ostream_variant_run.cpp
file_run.cpp
find_intersection_run.cpp
find_interval_run.cpp
gene_seq_map_run.cpp
id_bimap_run.cpp
interval_iter_run.cpp
lib_info_run.cpp
match_element_run.cpp
match_step_run.cpp
me_relative_interval.cpp
nucleotide_index_run.cpp
object_id_run.cpp
parser_fasta_run.cpp
parser_fastq_run.cpp
parser_qual_run.cpp
path_decompose_run.cpp
pipe_environment_run.cpp
print_sequence_run.cpp
processing_step_utils.hpp
read_info_store_run.cpp
sample_data.hpp
sample_sequences.hpp
sanitize_string_run.cpp
sequence_merge_run.cpp
sequence_run.cpp
sequence_store_run.cpp
sequence_transform_run.cpp
short_seq_map_run.cpp
suffix_tree_run.cpp
value_map_run.cpp
value_names_run.cpp
value_variant_run.cpp
vector_set_test.cpp
apply_to_adaptor.cpp
combine_option_trees.hpp
command_line_options.cpp
composition_stats_step.cpp
depth_first_iterator.cpp
external_mid_base.cpp
external_mid_infile.cpp
external_mid_inline.cpp
file.cpp
file_ostream_queue.cpp
file_ostream_variant.cpp
file_properties.cpp
file_stream.cpp
filter_base.cpp
filter_step.cpp
find_shared.cpp
find_shared_impl.hpp
gdst.cpp
gdst_ukkonen_inserter.hpp
histogram_step.cpp
input_csv.hpp
input_manager.cpp
input_manager_impl.hpp
keywords_root.hpp
keywords_variable.hpp
lib_info.cpp
mapped_sequence_properties.hpp
match_step.cpp
me_aligned.hpp
me_ambiguous.hpp
me_battery.cpp
me_battery.hpp
me_combination.hpp
me_factory.cpp
me_factory.hpp
me_positional.hpp
me_relative_interval.cpp
me_relative_interval.hpp
me_relative_position.hpp
me_short.hpp
me_truncate.hpp
me_types.hpp
merge_paired_reads_step.cpp
output_manager.cpp
output_stamp.cpp
pattern_iterator.cpp
pipe_environment.cpp
pipe_paired_emid_read.cpp
pipe_paired_read.cpp
pipe_single_read.cpp
print_gdst.cpp
process_options.cpp
quality_stats_step.cpp
sanitize_string.cpp
sequence_file_entry.cpp
sequence_map_aligned.hpp
sequence_map_full.hpp
sequence_map_parse.hpp
sequence_map_short.hpp
sequence_map_types.hpp
sequence_merge.cpp
step_base.cpp
step_builder_registry.hpp
step_factory_paired.cpp
step_factory_paired_emid.cpp
step_factory_single.cpp
step_registry.cpp
step_registry.hpp
value_names.cpp
value_variant.cpp
variable_path.cpp
write_sequence_step.cpp
write_value_step.cpp