vdj_pipe
pipeline for processing DNA sequence data
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#include <vector>
#include "boost/foreach.hpp"
#include "boost/property_tree/ptree_fwd.hpp"
#include "boost/variant/static_visitor.hpp"
#include "vdj_pipe/config.hpp"
#include "vdj_pipe/detail/keyword_struct_macro.hpp"
#include "vdj_pipe/exception.hpp"
#include "vdj_pipe/step/all_single_read_steps.hpp"
#include "vdj_pipe/step/step_maker.hpp"
#include "vdj_pipe/step/step_variant_single_read.hpp"
#include "vdj_pipe/step/visitor.hpp"
#include "vdj_pipe/value_map_access_paired.hpp"
Go to the source code of this file.
Classes | |
class | vdj_pipe::Apply_one |
Apply enclosed processing step once to a sequence read of specified kind: forward, reverse, or merged. More... | |
class | vdj_pipe::Apply_many |
Apply enclosed processing step multiple times to sequence reads of specified kind: forward, reverse, or merged. More... | |
class | vdj_pipe::Apply_many::Visitor |
class | vdj_pipe::step::Apply_to_maker |
struct | vdj_pipe::step::Apply_to_maker::Err |
struct | vdj_pipe::step::Find_maker< Apply_one > |
struct | vdj_pipe::step::Find_maker< Apply_many > |
Namespaces | |
vdj_pipe | |
Main namespace of vdj_pipe library. | |
vdj_pipe::step | |
part of vdj_pipe project.
Distributed under GNU General Public License, Version 3; see doc/license.txt.
Copyright Mikhail K Levin 2014