vdj_pipe::step Namespace Reference

Namespaces
	anonymous_namespace{apply_to_adaptor.cpp}

Classes
class	Apply_to_maker
struct	Find_maker
struct	Find_maker< Apply_many >
struct	Find_maker< Apply_one >
struct	Maker
class	Step_builder_registry

Typedefs
typedef boost::mpl::vector< Apply_many, Apply_one, Merge_paired >	paired_read_only_vector
	List of steps for paired read pipes. More...
typedef boost::mpl::insert_range< universal_steps, boost::mpl::end< universal_steps >::type, paired_read_only_vector >::type	paired_read_vector
	List of steps for paired read pipes. More...
typedef boost::mpl::vector< Blank_step, Histogram_step, Write_value >	universal_steps
	List of steps that can be used in all pipes. More...
typedef boost::mpl::insert_range< universal_steps, boost::mpl::end< universal_steps >::type, boost::mpl::push_back< paired_read_only_vector, External_mid_infile >::type >::type	paired_emid_read_vector
	List of steps for pipes of paired reads with eMIDs. More...
typedef boost::mpl::vector< Ambiguous_window_filter, Average_quality_filter, Average_quality_window_filter, Character_filter, Composition_stats, External_mid_inline, Find_shared, Homopolymer_filter, Length_filter, Match_step, Min_quality_filter, Min_quality_window_filter, Qual_stats, Write_seq >	single_read_only_vector
	List of steps suitable for single read pipes ONLY. More...
typedef boost::mpl::insert_range< universal_steps, boost::mpl::end< universal_steps >::type, single_read_only_vector >::type	single_read_vector
	List of all steps for single read pipes. More...
typedef boost::mpl::insert_range< universal_steps, boost::mpl::end< universal_steps >::type, boost::mpl::insert_range< single_read_only_vector, boost::mpl::end< single_read_only_vector >::type, boost::mpl::push_back< paired_read_only_vector, External_mid_infile >::type >::type >::type	all_steps_vector

Functions
	VDJ_PIPE_KEYWORD_STRUCT (kwds,(to)(step)(forward)(reverse)(merged))

Typedef Documentation

typedef boost::mpl::insert_range< universal_steps, boost::mpl::end<universal_steps>::type, boost::mpl::insert_range< single_read_only_vector, boost::mpl::end<single_read_only_vector>::type, boost::mpl::push_back<paired_read_only_vector,External_mid_infile>::type >::type>::type vdj_pipe::step::all_steps_vector

typedef boost::mpl::insert_range< universal_steps, boost::mpl::end<universal_steps>::type, boost::mpl::push_back<paired_read_only_vector, External_mid_infile>::type>::type vdj_pipe::step::paired_emid_read_vector

List of steps for pipes of paired reads with eMIDs.

typedef boost::mpl::vector< Apply_many, Apply_one, Merge_paired> vdj_pipe::step::paired_read_only_vector

List of steps for paired read pipes.

typedef boost::mpl::insert_range< universal_steps, boost::mpl::end<universal_steps>::type, paired_read_only_vector>::type vdj_pipe::step::paired_read_vector

List of steps for paired read pipes.

typedef boost::mpl::vector< Ambiguous_window_filter, Average_quality_filter, Average_quality_window_filter, Character_filter, Composition_stats, External_mid_inline, Find_shared, Homopolymer_filter, Length_filter, Match_step, Min_quality_filter, Min_quality_window_filter, Qual_stats, Write_seq> vdj_pipe::step::single_read_only_vector

List of steps suitable for single read pipes ONLY.

typedef boost::mpl::insert_range< universal_steps, boost::mpl::end<universal_steps>::type, single_read_only_vector>::type vdj_pipe::step::single_read_vector

List of all steps for single read pipes.

typedef boost::mpl::vector< Blank_step, Histogram_step, Write_value > vdj_pipe::step::universal_steps

List of steps that can be used in all pipes.

Function Documentation

vdj_pipe::step::VDJ_PIPE_KEYWORD_STRUCT	(	kwds	,
		(to)(step)(forward)(reverse)(merged)
	)