vdj_pipe::Merge_paired Class Reference

#include <merge_paired_reads_step.hpp>

Inheritance diagram for vdj_pipe::Merge_paired:

Collaboration diagram for vdj_pipe::Merge_paired:

Public Types
typedef Vm_access_paired	vma_type
Public Types inherited from vdj_pipe::detail::Step_base
typedef Seq_record::sequence	seq_type
typedef Qual_record::quality	qual_type

Public Member Functions
	Merge_paired (vma_type const &vma, boost::property_tree::ptree const &pt, Pipe_environment &pe)
void	run ()
void	finish ()
void	summary (std::ostream &os) const
Public Member Functions inherited from vdj_pipe::detail::Step_base
char	delimiter () const
	Step_base (boost::property_tree::ptree const &pt, Pipe_environment const &pe)
void	summary (std::ostream &) const

Private Attributes
Value_ids_single	vis_
Val_id	score_id_
Val_id	cigar_id_
std::size_t	n_merged_
unsigned	min_score_
bool	trimmed_

Additional Inherited Members
Protected Member Functions inherited from vdj_pipe::detail::Step_base_paired
	Step_base_paired (Vm_access_paired const &vma, boost::property_tree::ptree const &pt, Pipe_environment &pe)
Protected Attributes inherited from vdj_pipe::detail::Step_base_paired
Vm_access_paired	vma_

Member Typedef Documentation

typedef Vm_access_paired vdj_pipe::Merge_paired::vma_type

Constructor & Destructor Documentation

vdj_pipe::Merge_paired::Merge_paired	(	vma_type const &	vma,
		boost::property_tree::ptree const &	pt,
		Pipe_environment &	pe
	)

Member Function Documentation

void vdj_pipe::Merge_paired::finish ( )

inline

void vdj_pipe::Merge_paired::run

(

)

void vdj_pipe::Merge_paired::summary

(

std::ostream &

os

)

const

Member Data Documentation

Val_id vdj_pipe::Merge_paired::cigar_id_

private

unsigned vdj_pipe::Merge_paired::min_score_

private

std::size_t vdj_pipe::Merge_paired::n_merged_

private

Val_id vdj_pipe::Merge_paired::score_id_

private

bool vdj_pipe::Merge_paired::trimmed_

private

Value_ids_single vdj_pipe::Merge_paired::vis_

private

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The documentation for this class was generated from the following files:

• include/vdj_pipe/step/merge_paired_reads_step.hpp
• lib/merge_paired_reads_step.cpp