vdj_pipe::Pipe_environment Class Reference

#include <pipe_environment.hpp>

Collaboration diagram for vdj_pipe::Pipe_environment:

Classes
struct	Err

Public Member Functions
	Pipe_environment (boost::property_tree::ptree const &pt, Value_map const &vm)
Step_variant_store const &	steps () const
Step_variant_store &	steps ()
Input_manager const &	input () const
Input_manager &	input ()
Output_manager const &	output () const
Output_manager &	output ()
char	delimiter () const
std::size_t	max_reads () const
std::size_t	max_file_reads () const
bool	process_more ()
std::size_t	read_count () const
void	finish ()
void	process_read ()
void	summary ()
void	write_config (boost::property_tree::ptree const &pt, std::string const &path) const
void	start_file (std::string const &fn)
void	finish_file ()

Private Types
typedef boost::shared_ptr< Input_manager >	in_manager_ptr
typedef boost::shared_ptr< Output_manager >	out_manager_ptr

Private Member Functions
	BOOST_STATIC_CONSTANT (std::size_t, unset=static_cast< std::size_t >(-1))
std::ostream &	print_summary (std::ostream &os) const

Static Private Member Functions
static void	input_csv (boost::property_tree::ptree const &pt, std::vector< std::string > &vs)

Private Attributes
boost::shared_ptr< Step_variant_store >	steps_
in_manager_ptr	im_
out_manager_ptr	om_
std::size_t	max_reads_
std::size_t	max_file_reads_
std::string	summary_output_path_
boost::chrono::process_real_cpu_clock::time_point	t1_
boost::chrono::process_real_cpu_clock::time_point	t2_
boost::chrono::process_real_cpu_clock::time_point	t3_
bool	is_running_
bool	reads_skipped_
Value_map	vm_

Member Typedef Documentation

typedef boost::shared_ptr<Input_manager> vdj_pipe::Pipe_environment::in_manager_ptr

private

typedef boost::shared_ptr<Output_manager> vdj_pipe::Pipe_environment::out_manager_ptr

private

Constructor & Destructor Documentation

vdj_pipe::Pipe_environment::Pipe_environment	(	boost::property_tree::ptree const &	pt,
		Value_map const &	vm
	)

Member Function Documentation

vdj_pipe::Pipe_environment::BOOST_STATIC_CONSTANT ( std::size_t  , unset  = static_cast< std::size_t >(-1)  )

private

char vdj_pipe::Pipe_environment::delimiter ( ) const

inline

void vdj_pipe::Pipe_environment::finish

(

)

void vdj_pipe::Pipe_environment::finish_file

(

)

Input_manager const& vdj_pipe::Pipe_environment::input ( ) const

inline

Input_manager& vdj_pipe::Pipe_environment::input ( )

inline

void vdj_pipe::Pipe_environment::input_csv ( boost::property_tree::ptree const &  pt, std::vector< std::string > &  vs  )

staticprivate

std::size_t vdj_pipe::Pipe_environment::max_file_reads ( ) const

inline

std::size_t vdj_pipe::Pipe_environment::max_reads ( ) const

inline

Output_manager const& vdj_pipe::Pipe_environment::output ( ) const

inline

Output_manager& vdj_pipe::Pipe_environment::output ( )

inline

std::ostream & vdj_pipe::Pipe_environment::print_summary ( std::ostream &  os ) const

private

bool vdj_pipe::Pipe_environment::process_more ( )

inline

void vdj_pipe::Pipe_environment::process_read

(

)

std::size_t vdj_pipe::Pipe_environment::read_count

(

)

const

void vdj_pipe::Pipe_environment::start_file

(

std::string const &

fn

)

Step_variant_store const& vdj_pipe::Pipe_environment::steps ( ) const

inline

Step_variant_store& vdj_pipe::Pipe_environment::steps ( )

inline

void vdj_pipe::Pipe_environment::summary

(

)

void vdj_pipe::Pipe_environment::write_config	(	boost::property_tree::ptree const &	pt,
		std::string const &	path
	)		const

Member Data Documentation

in_manager_ptr vdj_pipe::Pipe_environment::im_

private

bool vdj_pipe::Pipe_environment::is_running_

private

std::size_t vdj_pipe::Pipe_environment::max_file_reads_

private

std::size_t vdj_pipe::Pipe_environment::max_reads_

private

out_manager_ptr vdj_pipe::Pipe_environment::om_

private

bool vdj_pipe::Pipe_environment::reads_skipped_

private

boost::shared_ptr<Step_variant_store> vdj_pipe::Pipe_environment::steps_

private

std::string vdj_pipe::Pipe_environment::summary_output_path_

private

boost::chrono::process_real_cpu_clock::time_point vdj_pipe::Pipe_environment::t1_

private

boost::chrono::process_real_cpu_clock::time_point vdj_pipe::Pipe_environment::t2_

private

boost::chrono::process_real_cpu_clock::time_point vdj_pipe::Pipe_environment::t3_

private

Value_map vdj_pipe::Pipe_environment::vm_

private

---

The documentation for this class was generated from the following files:

• include/vdj_pipe/pipe_environment.hpp
• lib/pipe_environment.cpp