vdj_pipe::Value_map Class Reference

Store values mapped against name strings and value IDs. More...

#include <value_map.hpp>

Inheritance diagram for vdj_pipe::Value_map:

Classes
struct	Err

Public Types
typedef map_type::iterator	iterator
typedef iterator	const_iterator

Public Member Functions
	Value_map ()
iterator	begin () const
iterator	end () const
std::size_t	size () const
void	clear_values ()
std::string const &	name (const Val_id vid) const
Val_id	insert_name (std::string const &name)
Val_id	insert_new_name (std::string const &name)
Val_id const *	find_id (std::string const &name) const
Val_id	value_id (std::string const &name) const
value_variant const &	operator[] (const Val_id vid) const
value_variant &	operator[] (const Val_id vid)
long	read_count () const
void	read_count_reset ()
void	read_count_incr ()
long	file_read_count () const
void	file_read_count_reset ()
void	file_read_count_incr ()
std::string const &	seq_file_name () const
void	seq_file_name (std::string const &fn)
std::string const &	read_id_nothrow () const
std::string const &	read_id () const
void	read_id (std::string const &id)
template<typename T >
T const &	value (std::string const &name) const
template<typename T >
T const *	value_ptr (std::string const &name) const
template<typename T >
T const &	value (const Val_id id) const
template<typename T >
T const *	value_ptr (const Val_id id) const
std::string const &	str_nothrow (const Val_id id) const

Protected Member Functions
std::string	sequence (const Val_id seq_id, const Val_id trim_id, const bool trimmed, const bool reverse_compl) const
Qual_record::quality	quality (const Val_id qual_id, const Val_id trim_id, const bool trimmed, const bool reverse_compl) const

Private Types
enum	{ read_count_i = 1, file_read_count_i = 2, seq_fn_i = 3, read_id_i = 4 }
typedef detail::Named_value_map< Val_id, value_variant >	map_type
typedef boost::shared_ptr< map_type >	map_ptr

Private Attributes
map_ptr	map_

Detailed Description

Store values mapped against name strings and value IDs.

Member Typedef Documentation

typedef iterator vdj_pipe::Value_map::const_iterator

typedef map_type::iterator vdj_pipe::Value_map::iterator

typedef boost::shared_ptr<map_type> vdj_pipe::Value_map::map_ptr

private

typedef detail::Named_value_map<Val_id, value_variant> vdj_pipe::Value_map::map_type

private

Member Enumeration Documentation

anonymous enum

private

Enumerator
read_count_i
file_read_count_i
seq_fn_i
read_id_i

Constructor & Destructor Documentation

vdj_pipe::Value_map::Value_map ( )

inline

Member Function Documentation

iterator vdj_pipe::Value_map::begin ( ) const

inline

void vdj_pipe::Value_map::clear_values ( )

inline

iterator vdj_pipe::Value_map::end ( ) const

inline

long vdj_pipe::Value_map::file_read_count ( ) const

inline

void vdj_pipe::Value_map::file_read_count_incr ( )

inline

void vdj_pipe::Value_map::file_read_count_reset ( )

inline

Val_id const* vdj_pipe::Value_map::find_id ( std::string const &  name ) const

inline

Val_id vdj_pipe::Value_map::insert_name ( std::string const &  name )

inline

Val_id vdj_pipe::Value_map::insert_new_name ( std::string const &  name )

inline

std::string const& vdj_pipe::Value_map::name ( const Val_id  vid ) const

inline

value_variant const& vdj_pipe::Value_map::operator[] ( const Val_id  vid ) const

inline

value_variant& vdj_pipe::Value_map::operator[] ( const Val_id  vid )

inline

Qual_record::quality vdj_pipe::Value_map::quality ( const Val_id  qual_id, const Val_id  trim_id, const bool  trimmed, const bool  reverse_compl  ) const

inlineprotected

long vdj_pipe::Value_map::read_count ( ) const

inline

void vdj_pipe::Value_map::read_count_incr ( )

inline

void vdj_pipe::Value_map::read_count_reset ( )

inline

std::string const& vdj_pipe::Value_map::read_id ( ) const

inline

void vdj_pipe::Value_map::read_id ( std::string const &  id )

inline

std::string const& vdj_pipe::Value_map::read_id_nothrow ( ) const

inline

std::string const& vdj_pipe::Value_map::seq_file_name ( ) const

inline

void vdj_pipe::Value_map::seq_file_name ( std::string const &  fn )

inline

std::string vdj_pipe::Value_map::sequence ( const Val_id  seq_id, const Val_id  trim_id, const bool  trimmed, const bool  reverse_compl  ) const

inlineprotected

std::size_t vdj_pipe::Value_map::size ( ) const

inline

std::string const& vdj_pipe::Value_map::str_nothrow ( const Val_id  id ) const

inline

template<typename T >

T const& vdj_pipe::Value_map::value ( std::string const &  name ) const

inline

template<typename T >

T const& vdj_pipe::Value_map::value ( const Val_id  id ) const

inline

Val_id vdj_pipe::Value_map::value_id ( std::string const &  name ) const

inline

template<typename T >

T const* vdj_pipe::Value_map::value_ptr ( std::string const &  name ) const

inline

template<typename T >

T const* vdj_pipe::Value_map::value_ptr ( const Val_id  id ) const

inline

Member Data Documentation

map_ptr vdj_pipe::Value_map::map_

private

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The documentation for this class was generated from the following file:

• include/vdj_pipe/value_map.hpp