vdj_pipe
pipeline for processing DNA sequence data
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A
Seq_map_short::Err
(
vdj_pipe
)
Gdst_stats
(
vdj_pipe::gdst
)
Step_registry::Meta
(
vdj_pipe
)
Seq_meta
(
vdj_pipe
)
Read_ginfo_store::Err
(
vdj_pipe
)
Get_match_length
(
vdj_pipe
)
Min_quality_filter
(
vdj_pipe
)
Seq_pos
(
vdj_pipe
)
Ambiguous_window_filter
(
vdj_pipe
)
Match_element_positional::Err
(
vdj_pipe::match
)
Getter
(
vdj_pipe::detail
)
Min_quality_window_filter
(
vdj_pipe
)
Seq_props
(
vdj_pipe::detail
)
Apply_many
(
vdj_pipe
)
Apply_to_maker::Err
(
vdj_pipe::step
)
Group_count
(
vdj_pipe
)
N
Seq_qual_record
(
vdj_pipe
)
Apply_one
(
vdj_pipe
)
Match_element_aligned::Err
(
vdj_pipe::match
)
Group_unique
(
vdj_pipe
)
Seq_record
(
vdj_pipe
)
Apply_to_maker
(
vdj_pipe::step
)
Step_base::Err
(
vdj_pipe::detail
)
H
Named_value_map
(
vdj_pipe::detail
)
Seq_store
(
vdj_pipe
)
Average_quality_filter
(
vdj_pipe
)
Match_element_ambiguous::Err
(
vdj_pipe::match
)
Null_buff
(
vdj_pipe
)
Sequence_bstats
(
vdj_pipe
)
Average_quality_window_filter
(
vdj_pipe
)
Match_combination::Err
(
vdj_pipe::match
)
Hash
(
vdj_pipe::anonymous_namespace{file_ostream_queue.cpp}
)
O
Sequence_gstats
(
vdj_pipe
)
B
Match_element_factory::Err
(
vdj_pipe::match
)
Id_bimap::Hash_id
(
vdj_pipe::detail
)
Step_base
(
vdj_pipe::detail
)
Cut_proto::Err
(
vdj_pipe::match
)
Histogram_1d
(
vdj_pipe
)
Output_manager
(
vdj_pipe
)
Step_base_paired
(
vdj_pipe::detail
)
Base_id
(
vdj_pipe::detail
)
Element_proto::Err
(
vdj_pipe::match
)
Histogram_step
(
vdj_pipe
)
P
Step_base_paired_emid
(
vdj_pipe::detail
)
Best_match_pair
(
vdj_pipe
)
Seq_map_aligned::Err
(
vdj_pipe
)
Homopolymer_filter
(
vdj_pipe
)
Step_base_single
(
vdj_pipe::detail
)
Blank
(
vdj_pipe
)
Seq_file_map::Err
(
vdj_pipe
)
I
Seq_file_map::Pair
(
vdj_pipe
)
Step_builder_registry
(
vdj_pipe::step
)
Blank_step
(
vdj_pipe
)
Seq_file_entry::Err
(
vdj_pipe
)
Parser_fasta
(
vdj_pipe
)
Step_harness
(
vdj_pipe::test
)
Branch
(
vdj_pipe::gdst
)
Output_manager::Err
(
vdj_pipe
)
Id1
(
vdj_pipe::test
)
Parser_fastq
(
vdj_pipe
)
Step_registry
(
vdj_pipe
)
C
Pipe_environment::Err
(
vdj_pipe
)
Id2
(
vdj_pipe::test
)
Parser_line
(
vdj_pipe::detail
)
Step_variant_store
(
vdj_pipe
)
Pipe_paired_read::Err
(
vdj_pipe
)
Id_bimap
(
vdj_pipe::detail
)
Parser_qual
(
vdj_pipe
)
Summary_visitor
(
vdj_pipe
)
Character_filter
(
vdj_pipe
)
Variable_path::Err
(
vdj_pipe
)
Id_iterator
(
vdj_pipe
)
Pattern_iter
(
vdj_pipe::gdst
)
Summary_visitor2
(
vdj_pipe
)
Children
(
vdj_pipe::gdst
)
Pipe_paired_emid_read::Err
(
vdj_pipe
)
Id_map
(
vdj_pipe::detail
)
Pipe_environment
(
vdj_pipe
)
T
Command_line_options
(
vdj_pipe
)
Vm_access_paired::Err
(
vdj_pipe
)
Identity
(
vdj_pipe
)
Pipe_paired_emid_read
(
vdj_pipe
)
Common_subseq
(
vdj_pipe::gdst
)
Command_line_options::Err
(
vdj_pipe
)
Input_manager
(
vdj_pipe
)
Pipe_paired_read
(
vdj_pipe
)
Truncate
(
vdj_pipe::match
)
Compare_vv
(
vdj_pipe::anonymous_namespace{histogram_step.cpp}
)
Pipe_single_read::Err
(
vdj_pipe
)
Step_builder_registry::Insert
(
vdj_pipe::step
)
Pipe_single_read
(
vdj_pipe
)
Type_index
(
vdj_pipe
)
Compare_vvv
(
vdj_pipe::anonymous_namespace{histogram_step.cpp}
)
Read_info_store::Err
(
vdj_pipe
)
Inserter
(
vdj_pipe::detail
)
Pipeline
(
vdj_pipe
)
Type_name
(
vdj_pipe::detail
)
Composition_stats
(
vdj_pipe
)
File::Err
(
vdj_pipe
)
Interval_checking_policy
(
vdj_pipe::detail
)
Pipeline_input
(
vdj_pipe
)
U
Config_paired_emid_reads
(
vdj_pipe
)
Queable_ofstream::Err
(
vdj_pipe
)
Interval_checking_policy< int >
(
vdj_pipe::detail
)
Q
Config_paired_reads
(
vdj_pipe
)
File_ostream_queue::Err
(
vdj_pipe
)
Is_ambiguous
(
vdj_pipe
)
Ukkonen_inserter
(
vdj_pipe::gdst
)
Config_single_reads
(
vdj_pipe
)
Vm_access_single::Err
(
vdj_pipe
)
L
Qual_record
(
vdj_pipe
)
Unambiguous_interval_iter
(
vdj_pipe
)
Cut_proto
(
vdj_pipe::match
)
Escape
(
vdj_pipe::anonymous_namespace{sanitize_string.cpp}
)
Qual_stats
(
vdj_pipe
)
V
D
Exception_fixture
(
vdj_pipe::test
)
Leaf
(
vdj_pipe::gdst
)
Quality
(
vdj_pipe
)
External_mid_base
(
vdj_pipe::detail
)
Length_filter
(
vdj_pipe
)
Queable_ofstream
(
vdj_pipe
)
Value_ids_emid
(
vdj_pipe
)
Depth_iter
(
vdj_pipe::gdst
)
External_mid_infile
(
vdj_pipe
)
Lib_info
(
vdj_pipe
)
Queable_ofstream_types
(
vdj_pipe::detail
)
Value_ids_paired
(
vdj_pipe
)
E
External_mid_inline
(
vdj_pipe
)
M
R
Value_ids_single
(
vdj_pipe
)
F
Value_map
(
vdj_pipe
)
Element_proto
(
vdj_pipe::match
)
Maker
(
vdj_pipe::step
)
Read_ginfo
(
vdj_pipe
)
Value_names
(
vdj_pipe
)
Equal
(
vdj_pipe::anonymous_namespace{file_ostream_queue.cpp}
)
File
(
vdj_pipe
)
Match
(
vdj_pipe::gdst
)
Read_ginfo_store
(
vdj_pipe
)
Variable_path
(
vdj_pipe
)
Id_bimap::Equal_id
(
vdj_pipe::detail
)
File_input
(
vdj_pipe
)
Seq_map_aligned::Match
(
vdj_pipe
)
Read_info
(
vdj_pipe
)
Vector_set
(
vdj_pipe::detail
)
Id_bimap::Equal_obj
(
vdj_pipe::detail
)
File_istream
(
vdj_pipe
)
Match_combination
(
vdj_pipe::match
)
Read_info_store
(
vdj_pipe
)
Apply_many::Visitor
(
vdj_pipe
)
Equal_string_ref
(
vdj_pipe::detail
)
File_ostream
(
vdj_pipe
)
Match_element_aligned
(
vdj_pipe::match
)
Relative_interval
(
vdj_pipe::match
)
Vm_access_paired
(
vdj_pipe
)
Match_fraction_length::Err
(
vdj_pipe
)
File_ostream_queue
(
vdj_pipe
)
Match_element_ambiguous
(
vdj_pipe::match
)
Relative_position
(
vdj_pipe::match
)
Vm_access_paired_emid
(
vdj_pipe
)
Get_match_length::Err
(
vdj_pipe
)
File_ostream_variant
(
vdj_pipe
)
Match_element_battery
(
vdj_pipe::match
)
Run_visitor
(
vdj_pipe
)
Vm_access_single
(
vdj_pipe
)
Input_manager::Err
(
vdj_pipe
)
File_output
(
vdj_pipe
)
Match_element_factory
(
vdj_pipe::match
)
S
W
File_ostream_variant::Err
(
vdj_pipe
)
Filter_base
(
vdj_pipe::detail
)
Match_element_positional
(
vdj_pipe::match
)
File_ostream::Err
(
vdj_pipe
)
Find_maker
(
vdj_pipe::step
)
Match_element_short
(
vdj_pipe::match
)
Seq_entry
(
vdj_pipe
)
Window_filter_base
(
vdj_pipe::detail
)
Seq_map_full::Err
(
vdj_pipe
)
Find_maker< Apply_many >
(
vdj_pipe::step
)
Match_element_visitor
(
vdj_pipe::match
)
Seq_file
(
vdj_pipe
)
Wrap
(
vdj_pipe
)
File_istream::Err
(
vdj_pipe
)
Find_maker< Apply_one >
(
vdj_pipe::step
)
Match_fraction_length
(
vdj_pipe
)
Seq_file_entry
(
vdj_pipe
)
Write_seq
(
vdj_pipe
)
Value_map::Err
(
vdj_pipe
)
Find_shared
(
vdj_pipe
)
Match_full_length
(
vdj_pipe
)
Seq_file_map
(
vdj_pipe
)
Write_value
(
vdj_pipe
)
Match_element_battery::Err
(
vdj_pipe::match
)
Finish_visitor
(
vdj_pipe::match::anonymous_namespace{me_battery.cpp}
)
Match_ignore_ends
(
vdj_pipe
)
Seq_fls
(
vdj_pipe
)
b
Parser_line::Err
(
vdj_pipe::detail
)
Finish_visitor
(
vdj_pipe
)
Match_min_length
(
vdj_pipe
)
Seq_map_aligned
(
vdj_pipe
)
Step_registry::Err
(
vdj_pipe
)
Four_file_ids
(
vdj_pipe::anonymous_namespace{pipe_paired_emid_read.cpp}
)
Match_step
(
vdj_pipe
)
Seq_map_full
(
vdj_pipe
)
base_exception
(
vdj_pipe
)
Gdst::Err
(
vdj_pipe::gdst
)
G
Merge_paired
(
vdj_pipe
)
Seq_map_short
(
vdj_pipe
)
c
Match_element_short::Err
(
vdj_pipe::match
)
Merge_result
(
vdj_pipe
)
Seq_match
(
vdj_pipe
)
Gdst
(
vdj_pipe::gdst
)
char_type_of< boost::string_ref >
(
boost::spirit::traits
)
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C
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D
|
E
|
F
|
G
|
H
|
I
|
L
|
M
|
N
|
O
|
P
|
Q
|
R
|
S
|
T
|
U
|
V
|
W
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