Public Member Functions
	Sequence_bstats (const unsigned n_exact=0)

void	store (const unsigned s1_pos, const unsigned s1_len, const unsigned match_len, const unsigned count, super_seq const &super, Seq_store const &ss)

std::ostream &	print (std::ostream &os, const char delim) const

Static Public Member Functions
static std::ostream &	print_header (std::ostream &os, const char delim)

Constructor & Destructor Documentation

vdj_pipe::Sequence_bstats::Sequence_bstats ( const unsigned n_exact = 0 )

inlineexplicit

Member Function Documentation

std::ostream& vdj_pipe::Sequence_bstats::print	(	std::ostream &	os,
		const char	delim
	)		const

inline

static std::ostream& vdj_pipe::Sequence_bstats::print_header	(	std::ostream &	os,
		const char	delim
	)

inlinestatic

void vdj_pipe::Sequence_bstats::store	(	const unsigned	s1_pos,
		const unsigned	s1_len,
		const unsigned	match_len,
		const unsigned	count,
		super_seq const &	super,
		Seq_store const &	ss
	)

inline

unsigned vdj_pipe::Sequence_bstats::gem_

number of exactly matching duplicates

unsigned vdj_pipe::Sequence_bstats::gme_

number of duplicates with mismatched ends

unsigned char vdj_pipe::Sequence_bstats::mm3_

mismatching or hanging 3' end length

unsigned char vdj_pipe::Sequence_bstats::mm5_

mismatching or hanging 5' end length

unsigned vdj_pipe::Sequence_bstats::n_

total number of copies

The documentation for this struct was generated from the following file: