find_shared.cpp File Reference

#include "vdj_pipe/step/find_shared.hpp"
#include <algorithm>
#include <iostream>
#include <map>
#include <sstream>
#include "boost/array.hpp"
#include "boost/assert.hpp"
#include "boost/assign/list_of.hpp"
#include "boost/filesystem/path.hpp"
#include "boost/foreach.hpp"
#include "boost/lexical_cast.hpp"
#include "boost/multi_array.hpp"
#include "boost/property_tree/ptree.hpp"
#include "boost/scoped_ptr.hpp"
#include "find_shared_impl.hpp"
#include "vdj_pipe/detail/vector_set.hpp"
#include "vdj_pipe/file_ostream_queue.hpp"
#include "vdj_pipe/gdst_search.hpp"
#include "vdj_pipe/gdst/gdst.hpp"
#include "vdj_pipe/output_stamp.hpp"
#include "vdj_pipe/pipe_environment.hpp"
#include "vdj_pipe/sequence_store.hpp"

Include dependency graph for find_shared.cpp:

Classes
struct	vdj_pipe::Sequence_bstats

Namespaces
	vdj_pipe
	Main namespace of vdj_pipe library.
	vdj_pipe::anonymous_namespace{find_shared.cpp}

Macros
#define	VDJ_PIPE_SOURCE

Functions
	vdj_pipe::VDJ_PIPE_KEYWORD_STRUCT (Find_shared::kwds,(min_length)(ignore_ends)(fraction_match)(consensus_trim)(min_duplicates)(trimmed)(reverse)(unset_value)(out_summary)(out_group_unique)(out_group_duplicates)(out_unique)(out_duplicates)(out_redundancy_histogram))
std::string	vdj_pipe::to_string (detail::Queable_ofstream_types::val_vector const v)
double	vdj_pipe::anonymous_namespace{find_shared.cpp}::quantiles (std::vector< unsigned > c, std::vector< unsigned > &q)

Variables
static const int	vdj_pipe::anonymous_namespace{find_shared.cpp}::N = 8
const boost::array< double, N >	vdj_pipe::anonymous_namespace{find_shared.cpp}::fracts

Detailed Description

part of vdj_pipe project.

Distributed under GNU General Public License, Version 3; see doc/license.txt.
Copyright Mikhail K Levin 2014

Macro Definition Documentation

#define VDJ_PIPE_SOURCE