vdj_pipe
pipeline for processing DNA sequence data
lib Directory Reference
Directory dependency graph for lib:
lib

Directories

directory  external
 
directory  test
 

Files

file  apply_to_adaptor.cpp
 
file  combine_option_trees.hpp [code]
 
file  command_line_options.cpp
 
file  composition_stats_step.cpp
 
file  depth_first_iterator.cpp
 
file  external_mid_base.cpp
 
file  external_mid_infile.cpp
 
file  external_mid_inline.cpp
 
file  file.cpp
 
file  file_ostream_queue.cpp
 
file  file_ostream_variant.cpp
 
file  file_properties.cpp
 
file  file_stream.cpp
 
file  filter_base.cpp
 
file  filter_step.cpp
 
file  find_shared.cpp
 
file  find_shared_impl.hpp [code]
 
file  gdst.cpp
 
file  gdst_ukkonen_inserter.hpp [code]
 
file  histogram_step.cpp
 
file  input_csv.hpp [code]
 
file  input_manager.cpp
 
file  input_manager_impl.hpp [code]
 
file  keywords_root.hpp [code]
 
file  keywords_variable.hpp [code]
 
file  lib_info.cpp
 
file  mapped_sequence_properties.hpp [code]
 
file  match_step.cpp
 
file  me_aligned.hpp [code]
 
file  me_ambiguous.hpp [code]
 
file  me_battery.cpp
 
file  me_battery.hpp [code]
 
file  me_combination.hpp [code]
 
file  me_factory.cpp
 
file  me_factory.hpp [code]
 
file  me_positional.hpp [code]
 
file  me_relative_interval.cpp
 
file  me_relative_interval.hpp [code]
 
file  me_relative_position.hpp [code]
 
file  me_short.hpp [code]
 
file  me_truncate.hpp [code]
 
file  me_types.hpp [code]
 
file  merge_paired_reads_step.cpp
 
file  output_manager.cpp
 
file  output_stamp.cpp
 
file  pattern_iterator.cpp
 
file  pipe_environment.cpp
 
file  pipe_paired_emid_read.cpp
 
file  pipe_paired_read.cpp
 
file  pipe_single_read.cpp
 
file  print_gdst.cpp
 
file  process_options.cpp
 
file  quality_stats_step.cpp
 
file  sanitize_string.cpp
 
file  sequence_file_entry.cpp
 
file  sequence_map_aligned.hpp [code]
 
file  sequence_map_full.hpp [code]
 
file  sequence_map_parse.hpp [code]
 
file  sequence_map_short.hpp [code]
 
file  sequence_map_types.hpp [code]
 
file  sequence_merge.cpp
 
file  step_base.cpp
 
file  step_builder_registry.hpp [code]
 
file  step_factory_paired.cpp
 
file  step_factory_paired_emid.cpp
 
file  step_factory_single.cpp
 
file  step_registry.cpp
 
file  step_registry.hpp [code]
 
file  value_names.cpp
 
file  value_variant.cpp
 
file  variable_path.cpp
 
file  write_sequence_step.cpp
 
file  write_value_step.cpp