vdj_pipe
pipeline for processing DNA sequence data
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lib
lib Directory Reference
Directory dependency graph for lib:
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Files
file
apply_to_adaptor.cpp
file
combine_option_trees.hpp
[code]
file
command_line_options.cpp
file
composition_stats_step.cpp
file
depth_first_iterator.cpp
file
external_mid_base.cpp
file
external_mid_infile.cpp
file
external_mid_inline.cpp
file
file.cpp
file
file_ostream_queue.cpp
file
file_ostream_variant.cpp
file
file_properties.cpp
file
file_stream.cpp
file
filter_base.cpp
file
filter_step.cpp
file
find_shared.cpp
file
find_shared_impl.hpp
[code]
file
gdst.cpp
file
gdst_ukkonen_inserter.hpp
[code]
file
histogram_step.cpp
file
input_csv.hpp
[code]
file
input_manager.cpp
file
input_manager_impl.hpp
[code]
file
keywords_root.hpp
[code]
file
keywords_variable.hpp
[code]
file
lib_info.cpp
file
mapped_sequence_properties.hpp
[code]
file
match_step.cpp
file
me_aligned.hpp
[code]
file
me_ambiguous.hpp
[code]
file
me_battery.cpp
file
me_battery.hpp
[code]
file
me_combination.hpp
[code]
file
me_factory.cpp
file
me_factory.hpp
[code]
file
me_positional.hpp
[code]
file
me_relative_interval.cpp
file
me_relative_interval.hpp
[code]
file
me_relative_position.hpp
[code]
file
me_short.hpp
[code]
file
me_truncate.hpp
[code]
file
me_types.hpp
[code]
file
merge_paired_reads_step.cpp
file
output_manager.cpp
file
output_stamp.cpp
file
pattern_iterator.cpp
file
pipe_environment.cpp
file
pipe_paired_emid_read.cpp
file
pipe_paired_read.cpp
file
pipe_single_read.cpp
file
print_gdst.cpp
file
process_options.cpp
file
quality_stats_step.cpp
file
sanitize_string.cpp
file
sequence_file_entry.cpp
file
sequence_map_aligned.hpp
[code]
file
sequence_map_full.hpp
[code]
file
sequence_map_parse.hpp
[code]
file
sequence_map_short.hpp
[code]
file
sequence_map_types.hpp
[code]
file
sequence_merge.cpp
file
step_base.cpp
file
step_builder_registry.hpp
[code]
file
step_factory_paired.cpp
file
step_factory_paired_emid.cpp
file
step_factory_single.cpp
file
step_registry.cpp
file
step_registry.hpp
[code]
file
value_names.cpp
file
value_variant.cpp
file
variable_path.cpp
file
write_sequence_step.cpp
file
write_value_step.cpp
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