vdj_pipe
pipeline for processing DNA sequence data
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#include <algorithm>
#include <functional>
#include <ostream>
#include <string>
#include <vector>
#include "boost/algorithm/string/classification.hpp"
#include "boost/algorithm/string/predicate.hpp"
#include "boost/assert.hpp"
#include "boost/container/flat_map.hpp"
#include "boost/foreach.hpp"
#include "boost/multi_index_container.hpp"
#include "boost/multi_index/hashed_index.hpp"
#include "boost/multi_index/member.hpp"
#include "boost/multi_index/ordered_index.hpp"
#include "boost/range.hpp"
#include "vdj_pipe/detail/identity_predicate.hpp"
#include "vdj_pipe/exception.hpp"
#include "vdj_pipe/file_stream.hpp"
#include "vdj_pipe/gdst_search.hpp"
#include "vdj_pipe/min_match_length.hpp"
#include "vdj_pipe/object_ids.hpp"
Go to the source code of this file.
Classes | |
struct | vdj_pipe::Read_ginfo |
Read ID and group ID. More... | |
class | vdj_pipe::Group_count |
class | vdj_pipe::Read_ginfo_store |
Read ID and group ID. More... | |
struct | vdj_pipe::Read_ginfo_store::Err |
struct | vdj_pipe::Sequence_gstats |
class | vdj_pipe::Group_unique |
Namespaces | |
vdj_pipe | |
Main namespace of vdj_pipe library. | |
part of vdj_pipe project.
Distributed under GNU General Public License, Version 3; see doc/license.txt.
Copyright Mikhail K Levin 2014