Collaboration diagram for vdj_pipe::Sequence_gstats:

Public Member Functions
	Sequence_gstats ()

	Sequence_gstats (Group_count const &gc, const Mapped_id mid)

std::ostream &	print (std::ostream &os, const char delim, const Mapped_id mid) const

Static Public Member Functions
static std::ostream &	print_header (std::ostream &os, const char delim)

Constructor & Destructor Documentation

vdj_pipe::Sequence_gstats::Sequence_gstats ( )

inline

vdj_pipe::Sequence_gstats::Sequence_gstats	(	Group_count const &	gc,
		const Mapped_id	mid
	)

inline

Member Function Documentation

std::ostream& vdj_pipe::Sequence_gstats::print	(	std::ostream &	os,
		const char	delim,
		const Mapped_id	mid
	)		const

inline

static std::ostream& vdj_pipe::Sequence_gstats::print_header	(	std::ostream &	os,
		const char	delim
	)

inlinestatic

Group_count vdj_pipe::Sequence_gstats::gc_

unsigned vdj_pipe::Sequence_gstats::gem_

number of exactly matching duplicates in group

unsigned vdj_pipe::Sequence_gstats::gme_

number of duplicates with mismatched ends in group

unsigned char vdj_pipe::Sequence_gstats::mm3_

mismatching or hanging 3' end length

unsigned char vdj_pipe::Sequence_gstats::mm5_

mismatching or hanging 5' end length

unsigned vdj_pipe::Sequence_gstats::tem_

number of exactly matching duplicates total

unsigned vdj_pipe::Sequence_gstats::tme_

number of duplicates with mismatched ends total

The documentation for this struct was generated from the following file: