vdj_pipe
pipeline for processing DNA sequence data
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#include <iosfwd>
#include <map>
#include <memory>
#include <string>
#include "boost/assert.hpp"
#include "boost/optional.hpp"
#include "boost/property_tree/ptree_fwd.hpp"
#include "mapped_sequence_properties.hpp"
#include "me_battery.hpp"
#include "vdj_pipe/config.hpp"
#include "vdj_pipe/exception.hpp"
Go to the source code of this file.
Classes | |
class | vdj_pipe::match::Match_element_factory |
struct | vdj_pipe::match::Match_element_factory::Err |
struct | vdj_pipe::match::Cut_proto |
struct | vdj_pipe::match::Cut_proto::Err |
struct | vdj_pipe::match::Element_proto |
struct | vdj_pipe::match::Element_proto::Err |
Namespaces | |
vdj_pipe | |
Main namespace of vdj_pipe library. | |
vdj_pipe::match | |
Functions | |
void | vdj_pipe::match::make_element_index (std::vector< std::string > const &me_names, std::vector< std::string > const &all_me_names, std::vector< std::size_t > &mev) |
void | vdj_pipe::match::make_column_inds (std::string const &line, std::vector< std::string > const &col_names, std::vector< int > &col_inds) |
void | vdj_pipe::match::parse_csv_combination (std::istream &is, std::vector< int > const &col_inds, detail::string_table &st) |
void | vdj_pipe::match::parse_csv_combination (bpt::ptree const &pt, Input_manager const &in, std::vector< std::string > const &me_names, std::vector< std::size_t > &mev, detail::string_table &st) |
Match_combination | vdj_pipe::match::make_combination (Value_map const &vm, bpt::ptree const &pt, Input_manager const &in, std::vector< std::string > const &me_names) |
part of vdj_pipe project.
Distributed under GNU General Public License, Version 3; see doc/license.txt.
Copyright Mikhail K Levin 2014