sequence_map_parse.hpp File Reference

#include <fstream>
#include <map>
#include <string>
#include <sstream>
#include <utility>
#include <vector>
#include "boost/assert.hpp"
#include "boost/foreach.hpp"
#include "boost/property_tree/ptree.hpp"
#include "boost/tokenizer.hpp"
#include "sequence_map_types.hpp"
#include "vdj_pipe/exception.hpp"
#include "vdj_pipe/input_manager.hpp"
#include "vdj_pipe/nucleotide_index.hpp"
#include "vdj_pipe/parser_fasta.hpp"

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Namespaces
	vdj_pipe
	Main namespace of vdj_pipe library.
	vdj_pipe::detail

Functions
void	vdj_pipe::detail::parse_sequences (bpt::ptree const &pt, name_seq_vector &nsv)
void	vdj_pipe::detail::parse_combinations (bpt::ptree const &pt, Input_manager const &in, string_table &st)
void	vdj_pipe::detail::parse_seq_files (bpt::ptree const &pt, Input_manager const &in, name_seq_vector &nsv)
name_seq_vector	vdj_pipe::detail::combine (name_seq_vector const &nsv, string_table const &st)

Detailed Description

part of vdj_pipe project.

Distributed under GNU General Public License, Version 3; see doc/license.txt.
Copyright Mikhail K Levin 2014