Namespaces
	anonymous_namespace{filter_base.cpp}

Classes
class	Base_id

struct	Equal_string_ref

class	External_mid_base

class	Filter_base

class	Getter
	Extract object by its ID and apply member function. More...

class	Id_bimap

class	Id_map

class	Inserter

struct	Interval_checking_policy

struct	Interval_checking_policy< int >

class	Named_value_map
	Store values mapped against name strings and value IDs. More...

class	Parser_line
	Basic line-based parser; use to derive other parsers. More...

struct	Queable_ofstream_types

struct	Seq_props

class	Step_base

class	Step_base_paired

class	Step_base_paired_emid

class	Step_base_single

struct	Type_name

class	Vector_set
	Collection of unique objects stored in an ordered vector. More...

class	Window_filter_base

Typedefs
typedef std::pair< std::string, std::string >	match_seq

typedef std::vector< match_seq >	name_seq_vector

typedef std::vector< std::string >	string_vector

typedef std::vector< string_vector >	string_table

Functions
void	parse_sequences (bpt::ptree const &pt, name_seq_vector &nsv)

void	parse_combinations (bpt::ptree const &pt, Input_manager const &in, string_table &st)

void	parse_seq_files (bpt::ptree const &pt, Input_manager const &in, name_seq_vector &nsv)

name_seq_vector	combine (name_seq_vector const &nsv, string_table const &st)

template<int A, int I, int P, int U>
scoring_matrix_t	make_sm ()

template<class ChT , class Tr , class S , class V >
std::basic_ostream< ChT, Tr > &	operator<< (std::basic_ostream< ChT, Tr > &os, Base_id< S, V > const &id)

template<class S , class V >
std::size_t	hash_value (Base_id< S, V > const &id)

Typedef Documentation

typedef std::pair<std::string,std::string> vdj_pipe::detail::match_seq

typedef std::vector<std::string> vdj_pipe::detail::string_vector

Function Documentation

name_seq_vector vdj_pipe::detail::combine	(	name_seq_vector const &	nsv,
		string_table const &	st
	)

inline

template<class S , class V >

std::size_t vdj_pipe::detail::hash_value ( Base_id< S, V > const & id )

inline

template<int A, int I, int P, int U>

scoring_matrix_t vdj_pipe::detail::make_sm ( )

inline

template<class ChT , class Tr , class S , class V >

std::basic_ostream<ChT,Tr>& vdj_pipe::detail::operator<<	(	std::basic_ostream< ChT, Tr > &	os,
		Base_id< S, V > const &	id
	)

inline

void vdj_pipe::detail::parse_combinations	(	bpt::ptree const &	pt,
		Input_manager const &	in,
		string_table &	st
	)

inline

void vdj_pipe::detail::parse_seq_files	(	bpt::ptree const &	pt,
		Input_manager const &	in,
		name_seq_vector &	nsv
	)

inline

void vdj_pipe::detail::parse_sequences	(	bpt::ptree const &	pt,
		name_seq_vector &	nsv
	)

inline