vdj_pipe::detail::Parser_line Class Reference

Basic line-based parser; use to derive other parsers. More...

#include <parser_line.hpp>

Inheritance diagram for vdj_pipe::detail::Parser_line:

Collaboration diagram for vdj_pipe::detail::Parser_line:

Classes
struct	Err

Public Member Functions
int	line_num () const
bool	has_next () const

Protected Member Functions
	Parser_line (File_input const &fi)
	Parser_line (std::istream &is, const compression::Compression compr)
void	skip_line ()
void	seek_line (const char tag)
const boost::string_ref	get_id (const char tag)
void	set_meta (Seq_meta &sm, const char tag)
const boost::string_ref	get_defstr (const char tag)
std::string	get_sequence (const char tag)
void	check () const

Protected Attributes
File_istream	fis_
std::string	str_
int	line_

Detailed Description

Basic line-based parser; use to derive other parsers.

Constructor & Destructor Documentation

vdj_pipe::detail::Parser_line::Parser_line ( File_input const &  fi )

inlineexplicitprotected

vdj_pipe::detail::Parser_line::Parser_line ( std::istream &  is, const compression::Compression  compr  )

inlineexplicitprotected

Member Function Documentation

void vdj_pipe::detail::Parser_line::check ( ) const

inlineprotected

const boost::string_ref vdj_pipe::detail::Parser_line::get_defstr ( const char  tag )

inlineprotected

const boost::string_ref vdj_pipe::detail::Parser_line::get_id ( const char  tag )

inlineprotected

std::string vdj_pipe::detail::Parser_line::get_sequence ( const char  tag )

inlineprotected

bool vdj_pipe::detail::Parser_line::has_next ( ) const

inline

int vdj_pipe::detail::Parser_line::line_num ( ) const

inline

void vdj_pipe::detail::Parser_line::seek_line ( const char  tag )

inlineprotected

seek line starting from tag

void vdj_pipe::detail::Parser_line::set_meta ( Seq_meta &  sm, const char  tag  )

inlineprotected

void vdj_pipe::detail::Parser_line::skip_line ( )

inlineprotected

Member Data Documentation

File_istream vdj_pipe::detail::Parser_line::fis_

protected

int vdj_pipe::detail::Parser_line::line_

protected

std::string vdj_pipe::detail::Parser_line::str_

protected

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The documentation for this class was generated from the following file:

• include/vdj_pipe/detail/parser_line.hpp