vdj_pipe
pipeline for processing DNA sequence data
Public Member Functions | Protected Member Functions | Protected Attributes | List of all members
vdj_pipe::detail::Filter_base Class Reference

#include <filter_base.hpp>

Inheritance diagram for vdj_pipe::detail::Filter_base:
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Collaboration diagram for vdj_pipe::detail::Filter_base:
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Public Member Functions

void summary (std::ostream &os) const
 
- Public Member Functions inherited from vdj_pipe::detail::Step_base_single
void reset_access (Value_ids_single const &ids)
 
- Public Member Functions inherited from vdj_pipe::detail::Step_base
char delimiter () const
 
 Step_base (boost::property_tree::ptree const &pt, Pipe_environment const &pe)
 
void summary (std::ostream &) const
 

Protected Member Functions

 VDJ_PIPE_KEYWORD_STRUCT (kwds,(passed_name))
 
 Filter_base (vma_type const &vma, boost::property_tree::ptree const &pt, Pipe_environment &pe)
 
void pass (const bool b)
 
- Protected Member Functions inherited from vdj_pipe::detail::Step_base_single
 Step_base_single (vma_type const &vma, boost::property_tree::ptree const &pt, Pipe_environment const &pe)
 

Protected Attributes

std::size_t nf_
 
Val_id pass_id_
 
- Protected Attributes inherited from vdj_pipe::detail::Step_base_single
Vm_access_single vma_
 

Additional Inherited Members

- Public Types inherited from vdj_pipe::detail::Step_base_single
typedef Vm_access_single vma_type
 
- Public Types inherited from vdj_pipe::detail::Step_base
typedef Seq_record::sequence seq_type
 
typedef Qual_record::quality qual_type
 

Constructor & Destructor Documentation

vdj_pipe::detail::Filter_base::Filter_base ( vma_type const &  vma,
boost::property_tree::ptree const &  pt,
Pipe_environment pe 
)
protected

Member Function Documentation

void vdj_pipe::detail::Filter_base::pass ( const bool  b)
inlineprotected
void vdj_pipe::detail::Filter_base::summary ( std::ostream &  os) const
vdj_pipe::detail::Filter_base::VDJ_PIPE_KEYWORD_STRUCT ( kwds  ,
(passed_name)   
)
protected

Member Data Documentation

std::size_t vdj_pipe::detail::Filter_base::nf_
protected
Val_id vdj_pipe::detail::Filter_base::pass_id_
protected

The documentation for this class was generated from the following files: