vdj_pipe::Value_ids_single Class Reference

Provides access to standard values for single read pipeline. More...

#include <value_names.hpp>

Public Member Functions
	Value_ids_single (Value_map &vm, Value_names::single_read_names const &names)
Val_id	description () const
Val_id	sequence () const
Val_id	quality () const
Val_id	trim () const
Val_id	direction () const
Val_id	sequence_path () const
Val_id	quality_path () const
bool	is_reverse () const

Static Public Member Functions
static Value_ids_single	create (Value_map &vm, Value_names::single_read_names const &names)
static Value_ids_single	ensure (Value_map const &vm, Value_names::single_read_names const &names)

Private Types
typedef boost::array< Val_id, 7 >	id_array

Private Member Functions
	Value_ids_single ()

Private Attributes
id_array	ida_
bool	is_reverse_

Detailed Description

Provides access to standard values for single read pipeline.

Member Typedef Documentation

typedef boost::array<Val_id, 7> vdj_pipe::Value_ids_single::id_array

private

Constructor & Destructor Documentation

vdj_pipe::Value_ids_single::Value_ids_single ( )

inlineprivate

vdj_pipe::Value_ids_single::Value_ids_single	(	Value_map &	vm,
		Value_names::single_read_names const &	names
	)

names that are not in value map are created

Member Function Documentation

Value_ids_single vdj_pipe::Value_ids_single::create ( Value_map &  vm, Value_names::single_read_names const &  names  )

static

All names are added to value map; throws if name already exists

Val_id vdj_pipe::Value_ids_single::description ( ) const

inline

Val_id vdj_pipe::Value_ids_single::direction ( ) const

inline

Value_ids_single vdj_pipe::Value_ids_single::ensure ( Value_map const &  vm, Value_names::single_read_names const &  names  )

static

Ensure that names are already present in value map

bool vdj_pipe::Value_ids_single::is_reverse ( ) const

inline

Val_id vdj_pipe::Value_ids_single::quality ( ) const

inline

Val_id vdj_pipe::Value_ids_single::quality_path ( ) const

inline

Val_id vdj_pipe::Value_ids_single::sequence ( ) const

inline

Val_id vdj_pipe::Value_ids_single::sequence_path ( ) const

inline

Val_id vdj_pipe::Value_ids_single::trim ( ) const

inline

Member Data Documentation

id_array vdj_pipe::Value_ids_single::ida_

private

bool vdj_pipe::Value_ids_single::is_reverse_

private

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The documentation for this class was generated from the following files:

• include/vdj_pipe/value_names.hpp
• lib/value_names.cpp