vdj_pipe::Input_manager Class Reference

#include <input_manager.hpp>

Collaboration diagram for vdj_pipe::Input_manager:

Classes
struct	Err

Public Types
typedef in_v_t::const_iterator	iterator
typedef in_v_t::const_iterator	const_iterator

Public Member Functions
	Input_manager (std::string const &base, boost::property_tree::ptree const &pt, Value_map &vm)
	Input_manager (std::string const &base, const bool is_paired=false, const bool has_emid=false, const bool has_qual=true)
std::size_t	size () const
bool	empty () const
const_iterator	begin () const
const_iterator	end () const
std::string	path (std::string const &fn) const
bool	is_paired () const
bool	has_emid () const
bool	has_quality () const

Static Public Member Functions
static std::string	path (std::string const &root, std::string const &fn)

Private Types
typedef std::vector< Seq_file_entry >	in_v_t

Static Private Member Functions
static std::string	check_dir (std::string const &dir)

Private Attributes
std::string	root_
in_v_t	iv_
bool	is_paired_
bool	has_emid_
bool	has_qual_

Member Typedef Documentation

typedef in_v_t::const_iterator vdj_pipe::Input_manager::const_iterator

typedef std::vector<Seq_file_entry> vdj_pipe::Input_manager::in_v_t

private

typedef in_v_t::const_iterator vdj_pipe::Input_manager::iterator

Constructor & Destructor Documentation

vdj_pipe::Input_manager::Input_manager	(	std::string const &	base,
		boost::property_tree::ptree const &	pt,
		Value_map &	vm
	)

vdj_pipe::Input_manager::Input_manager ( std::string const &  base, const bool  is_paired = false, const bool  has_emid = false, const bool  has_qual = true  )

inline

Member Function Documentation

const_iterator vdj_pipe::Input_manager::begin ( ) const

inline

std::string vdj_pipe::Input_manager::check_dir ( std::string const &  dir )

staticprivate

bool vdj_pipe::Input_manager::empty ( ) const

inline

const_iterator vdj_pipe::Input_manager::end ( ) const

inline

bool vdj_pipe::Input_manager::has_emid ( ) const

inline

Returns

true if all input entries include eMID files

bool vdj_pipe::Input_manager::has_quality ( ) const

inline

Returns

true if all input entries have quality

bool vdj_pipe::Input_manager::is_paired ( ) const

inline

Returns

true if all input entries are paired

std::string vdj_pipe::Input_manager::path ( std::string const &  root, std::string const &  fn  )

static

std::string vdj_pipe::Input_manager::path ( std::string const &  fn ) const

inline

std::size_t vdj_pipe::Input_manager::size ( ) const

inline

Member Data Documentation

bool vdj_pipe::Input_manager::has_emid_

private

bool vdj_pipe::Input_manager::has_qual_

private

bool vdj_pipe::Input_manager::is_paired_

private

in_v_t vdj_pipe::Input_manager::iv_

private

std::string vdj_pipe::Input_manager::root_

private

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The documentation for this class was generated from the following files:

• include/vdj_pipe/input_manager.hpp
• lib/input_manager.cpp