sequence_map_aligned.hpp File Reference

#include <limits>
#include <stdint.h>
#include <vector>
#include "boost/assert.hpp"
#include "boost/foreach.hpp"
#include "external/ssw_cpp.h"
#include "vdj_pipe/detail/id_bimap.hpp"
#include "vdj_pipe/detail/id_iterator.hpp"
#include "vdj_pipe/exception.hpp"
#include "vdj_pipe/gdst/gdst.hpp"
#include "vdj_pipe/interval_iterator.hpp"
#include "vdj_pipe/parser_fasta.hpp"
#include "vdj_pipe/sequence_interval.hpp"
#include "vdj_pipe/sequence_transform.hpp"

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Classes
class	vdj_pipe::Seq_map_aligned
struct	vdj_pipe::Seq_map_aligned::Err
struct	vdj_pipe::Seq_map_aligned::Match

Namespaces
	vdj_pipe
	Main namespace of vdj_pipe library.

Detailed Description

part of vdj_pipe project.

Distributed under GNU General Public License, Version 3; see doc/license.txt.
Copyright Mikhail K Levin 2014