filter_step.cpp File Reference

#include "vdj_pipe/step/filter_step.hpp"
#include <limits>
#include "boost/accumulators/accumulators.hpp"
#include "boost/accumulators/statistics/mean.hpp"
#include "boost/accumulators/statistics/stats.hpp"
#include "boost/foreach.hpp"
#include "boost/numeric/conversion/cast.hpp"
#include "boost/range/algorithm/copy.hpp"
#include "boost/range/algorithm/sort.hpp"
#include "boost/range/algorithm/binary_search.hpp"
#include "boost/property_tree/ptree.hpp"
#include "vdj_pipe/sequence_record.hpp"
#include "vdj_pipe/pipe_environment.hpp"
#include "vdj_pipe/find_interval.hpp"

Include dependency graph for filter_step.cpp:

Namespaces
	vdj_pipe
	Main namespace of vdj_pipe library.

Macros
#define	VDJ_PIPE_SOURCE

Functions
	vdj_pipe::VDJ_PIPE_KEYWORD_STRUCT (Character_filter::kwds,(chars))
	vdj_pipe::VDJ_PIPE_KEYWORD_STRUCT (Length_filter::kwds,(min)(max)(trim))
	vdj_pipe::VDJ_PIPE_KEYWORD_STRUCT (Homopolymer_filter::kwds,(max_length))
	vdj_pipe::VDJ_PIPE_KEYWORD_STRUCT (Min_quality_filter::kwds,(min_quality))
	vdj_pipe::VDJ_PIPE_KEYWORD_STRUCT (Average_quality_filter::kwds,(min_quality))
	vdj_pipe::VDJ_PIPE_KEYWORD_STRUCT (Min_quality_window_filter::kwds,(min_quality)(min_length))
	vdj_pipe::VDJ_PIPE_KEYWORD_STRUCT (Average_quality_window_filter::kwds,(min_quality)(min_length)(window_length))
	vdj_pipe::VDJ_PIPE_KEYWORD_STRUCT (Ambiguous_window_filter::kwds,(min_length)(max_ambiguous))

Detailed Description

part of vdj_pipe project.

Distributed under GNU General Public License, Version 3; see doc/license.txt.
Copyright Mikhail K Levin 2013

Macro Definition Documentation

#define VDJ_PIPE_SOURCE