vdj_pipe::match::Match_element_battery Class Reference

#include <me_battery.hpp>

Collaboration diagram for vdj_pipe::match::Match_element_battery:

Classes
struct	Err

Public Member Functions
	Match_element_battery (variant_vector const &vv, truncate_vector const &tv, detail::string_vector const &names, detail::string_vector const &dep_names, std::vector< bool > const &is_required, combination_vector const &cv)
std::size_t	size () const
sequence_interval	operator() (sequence const &seq, quality const &qual, sequence_interval const &si)
void	finish ()
std::size_t	n_removed () const

Private Types
typedef Seq_record::sequence	sequence
typedef Qual_record::quality	quality

Private Attributes
variant_vector	mev_
truncate_vector	tv_
std::vector< std::size_t >	me_deps_
std::vector< bool >	required_
combination_vector	cv_
std::size_t	n_removed_

Member Typedef Documentation

typedef Qual_record::quality vdj_pipe::match::Match_element_battery::quality

private

typedef Seq_record::sequence vdj_pipe::match::Match_element_battery::sequence

private

Constructor & Destructor Documentation

vdj_pipe::match::Match_element_battery::Match_element_battery	(	variant_vector const &	vv,
		truncate_vector const &	tv,
		detail::string_vector const &	names,
		detail::string_vector const &	dep_names,
		std::vector< bool > const &	is_required,
		combination_vector const &	cv
	)

Member Function Documentation

void vdj_pipe::match::Match_element_battery::finish

(

)

std::size_t vdj_pipe::match::Match_element_battery::n_removed ( ) const

inline

sequence_interval vdj_pipe::match::Match_element_battery::operator() ( sequence const &  seq, quality const &  qual, sequence_interval const &  si  )

inline

Apply match elements to read sequence and perform truncation

Parameters

seq	read sequence
qual	read quality
si	read truncation interval

Returns

updated read truncation

std::size_t vdj_pipe::match::Match_element_battery::size ( ) const

inline

Member Data Documentation

combination_vector vdj_pipe::match::Match_element_battery::cv_

private

std::vector<std::size_t> vdj_pipe::match::Match_element_battery::me_deps_

private

variant_vector vdj_pipe::match::Match_element_battery::mev_

private

std::size_t vdj_pipe::match::Match_element_battery::n_removed_

private

std::vector<bool> vdj_pipe::match::Match_element_battery::required_

private

truncate_vector vdj_pipe::match::Match_element_battery::tv_

private

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The documentation for this class was generated from the following files:

• lib/me_battery.hpp
• lib/me_battery.cpp