Inheritance diagram for vdj_pipe::Histogram_step:

Collaboration diagram for vdj_pipe::Histogram_step:

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Public Types
typedef Value_map	vma_type

Public Types inherited from vdj_pipe::detail::Step_base
typedef Seq_record::sequence	seq_type

typedef Qual_record::quality	qual_type

Public Member Functions
	VDJ_PIPE_STATIC_STRING_METHOD (comment,"build a histogram of value occurrences") Histogram_step(vma_type const &vm

void	reset_access (Value_ids_single const &ids)

void	run ()

void	finish ()

Public Member Functions inherited from vdj_pipe::detail::Step_base
char	delimiter () const

	Step_base (boost::property_tree::ptree const &pt, Pipe_environment const &pe)

void	summary (std::ostream &) const

Public Attributes
boost::property_tree::ptree const &	pt

boost::property_tree::ptree const Pipe_environment &	pe

Private Types
typedef std::vector< value_variant >	hvalue_t

typedef boost::unordered_map< hvalue_t, std::size_t >	map_t

Private Member Functions
void	write_header (std::ostream &os) const

Member Typedef Documentation

private

typedef boost::unordered_map<hvalue_t, std::size_t> vdj_pipe::Histogram_step::map_t

private

Member Function Documentation

void vdj_pipe::Histogram_step::finish ( )

void vdj_pipe::Histogram_step::reset_access ( Value_ids_single const & ids )

inline

void vdj_pipe::Histogram_step::run ( )

vdj_pipe::Histogram_step::VDJ_PIPE_STATIC_STRING_METHOD	(	comment	,
		"build a histogram of value occurrences"
	)		const

void vdj_pipe::Histogram_step::write_header ( std::ostream & os ) const

private

File_output vdj_pipe::Histogram_step::f_

private

std::vector<Val_id> vdj_pipe::Histogram_step::ids_

private

map_t vdj_pipe::Histogram_step::map_

private

boost::property_tree::ptree const Pipe_environment& vdj_pipe::Histogram_step::pe

boost::property_tree::ptree const& vdj_pipe::Histogram_step::pt

Value_map vdj_pipe::Histogram_step::vm_

private

The documentation for this class was generated from the following files: